Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1488 ATGGGGAGAGGTAGGGTTGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAGAGAAGAAATGGCCTTCTCAAGAAGGCGTACGAACTTTCGGTGCTCTGCGACGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTCTGCAGTAGCTCGAGCATGCTCAAAACCCTTGAGAGGTATCAGAAGTGCAATTATGGAGCACCGGAGACAAATGTATCCACAAGGGAGGCCCTGGAGTTAAGTAGTCAGCAGGAATATTTGAAACTTAAAGCACGTTATGAAGCCCTACAACGATCCCAGAGGAATCTTCTTGGGGAGGATCTTGGCCCTTTGAGCACGAAGGAACTTGAGTCACTGGAAAGGCAGCTTGATGTATCACTGAAGCAGATCAGGTCAACGCGAACACAGTACATGCTGGATCAACTCACCGATCTTCAGAGAAAGGAACACATGCTCAATGAAGCAAACAAGACCCTGAAGCAAAGGTTGTTGGAAGGAACACAGGTAAACCAGCTCCAGTGGAATCCAAATGCACAAGACGTGGGCTATGGTCGGCAACAAGCTCAGCCTCAGGGCGATGGCTTCTTCCATCCCTTAGAGTGTGAGCCCACGTTACAAATCGGATACCAGCCCGATCCAATAACGGTTGCAGCAGCAGGCCCCAGTGTGAATAACTACATGCCGGGATGGTTGCCATGA 729 0.4925 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSTKELESLERQLDVSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRLLEGTQVNQLQWNPNAQDVGYGRQQAQPQGDGFFHPLECEPTLQIGYQPDPITVAAAGPSVNNYMPGWLP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1488 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vvi1g1488 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vvi1g1488 242 Coils Coil 152 172 - -
Vvi1g1488 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Vvi1g1488 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g1488 242 FunFam MADS-box transcription factor 7 13 98 - -
Vvi1g1488 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 Coils Coil 126 146 - -
Vvi1g1488 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g1488 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vvi1g1488 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1488 Vvi-Chr1 21369198 21386271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1488 1 242 MADS-box Gene Family AT1G24260 75.304 4.97e-119 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi1g1488 K-box 9.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1488 - - vvi:100232869 483.026