Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1487 ATGGGTAGGAAGAAGGTCGAACTGAAGCGAATCGAAGACAAGAGCAGTCGCCAGGTGACCTTCTCAAAGAGGCGAAATGGCTTGATCAAGAAAGCTCGCGAGCTCTCTGTTCTCTGCGATGTCGATGTTGCCGTCCTCGTCTTCTCCAGCCGTGGAAAGCTCTACGAGTACGCTAATGGAAACAGGTATGTCTCTTCTCTATTTTTTGCCGATAAAACGGGGGAAAGTTGA 231 0.4935 MGRKKVELKRIEDKSSRQVTFSKRRNGLIKKARELSVLCDVDVAVLVFSSRGKLYEYANGNRYVSSLFFADKTGES* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1487 76 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Vvi1g1487 76 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Vvi1g1487 76 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Vvi1g1487 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g1487 76 Gene3D - 13 69 IPR036879 GO:0003677|GO:0046983
Vvi1g1487 76 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1487 Vvi-Chr1 21325536 21325766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1487 1 67 MADS-box Gene Family AT5G10140 70.149 1.67e-28 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi1g1487 SRF-TF 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1487 - K09264 vvi:100267653 120.553