Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1481 ATGTCTGGCTTTGATTTTAACGATCTTTTAAAAGAAGCTCAAATCCGTTGGCTAAAGCCTGCTGAAGTGCTCTTTATTTTACAGAATTATGAGAAGCATCAGCTTACTCAAGAGCCTCCTCAGAAACCAACTAGTGGTTCTCTGTTTCTTTTTAATAAGAGAGTCCTTCGTTTTTTCCGTAAAGATGGTCATAGTTGGCGTAAGAAGAAGGATGGGAGGACTGTTGGGGAAGCACATGAGCGTCTCAAGGTTGGAACTGTTGAAACTATAAATTGTTATTATGCACATGGAGAACAGAATCCCAGTTTTCAAAGGCGTAGCTATTGGATGCTGGATCCGGCATATGAGCACATTGTTCTAGTTCATTATAGAGAGATAAGTGAGGGAAGGCACAGTCCTGGATCCAATTCACTGTTGTCATCAGGATCCACTCAAACTCAGAGTCCCAGCTCTTATAATTCTCAAATTCCAGGCTCTACGTCTGCAGTTAGTGAATTATATGATTCACCCCAAAATGTTTGCAGTCCAGGGTCTGTAGAAGTTAGTTCTGAGGTAGTAATGAAGAGTAATGTCAGAGAACACTTGGACCGGATAAATGGCATAGGAGATTTTGGTAATTCATCTGAGCTTGAGGTTAGTCAAGCATTGCGAAGGCTTGAGGAGCAGTTAAGTTTGAATGATGACAGCTTGGAAGCAATTGATGCATTTCAGAGTCAGAATGAGAATATGAATGGCTTGGAAACTCTAGAATATGAAAGGAAGATGTCTAAACAGGATCAGCATGCAGTTTTACTTAGTGGACCAGAATATACTGTACATGATCAACATTACACTGGATATGCTGGTTGTAGTACAGATGATCTTATGCTGCCACAAGATGCAGGTGACAACAGGGAACATTATCATCATCAATCTACAGTTGAAGGGAGAGACACCTTATCATGGGAAGAGATAATGGAGTTCTGCAAGAGTTCATCCGGTGTGGACTCAAAAGAGAAACACAAATCTTATGGAAATGAAAGACCACTTTCTTCTTCAGGGAGGGGAGCAGCTGAGAAGCAGCAAAACTCTCATTGGCTAAATGTTGATGGGACTAATTCTGAAAGTTCTTCTATATTGTTACCTTCAGAAGTTGAAAATTTGAACTTTCCTGAATATAAGACAAATACTCATGCTGTCAACTCAGACTACTACAGAATGTTGTTTGACGAAGGTCAGATTGAAGTGCCTCTAGAATCAGGTCCAAGTTTGACTCTTGCACAAAAACAGCGATTTACGATCTGTGAAATATCACCAGAATGGGGTTTTTCCAGTGAGACTACAAAGGTAATCATTGCAGGGTCTTTTCTCTGTCATCCATCAGAGTGTGCATGGACTTGTATGTTTGGTGACATTGAAGTTCCTGTTCAGATCATTCAGGAAGGTGTCATCTGTTGCCAGGCTCCTCCTCACCCTCCTGGAAAGGTCACTCTCTGCATTACTTCTGGAAATCGAGAGTCCTGCAGTGAGGTTAGAGAGTTTGAGTACCATGCTAAGACAAGTAGTTGTACTCACTGTAATTTATCCCAAACAGAAGCAACTAAGAGTCCAGAAGAACTGTTGTTACTTGCCAGATTTGTGCAGATGCTTCTGTTTGATCCATTGATGCACAGAAGAGATGGTATTGAATCTGGAATTGATCTATTGATAAAATCAAAAGCTGATGAAGATTCATGGGATTGTATTATAGAGGCACTTTTATTTGGCAGTGGGACTTCATCTAGTACTGTGGATTGGCTTCTGCAAGAGCTTCTGAAAGACAAGTTGCATCAGTGGCTTTCTTCCCGATCCCGGGAAGGATGCGAGTCATTTGGATGTTCCTTGTCCAAAAAAGAGCAAGGGATGATACACATGATTGCTGGGTTAGGCTTTGAGTGGGCCTTAAACCCAATTCTTAACACTGGAGTCAGCATAAATTTCCGTGACATTAATGGGTGGACTGCCCTTCATTGGGCAGCACGTTTTGGAAGGGAAAAAATGGTTGCTGCACTTATAGCTTCCGGTGCATCAGCTGGGGCAGTGACAGATCCCAGTCCACAAGATCCCACTGGTAAAACTGCAGCATCCATTGCTTCCACAAGCGGGCATAAGGGACTTGCTGGTTATCTTTCTGAGGTGGCAGTAACTAGTCATCTGTCATCCCTCACTCTGGAAGAAAGTGAGCTTTCAAAAGGGTCTGCTGAGGTGGAAGCAGAAATTACTGTAAATAATATCTCAAAAGGGGGCCTTGCTGCTAGTGAGGATCAGATTCCGCTTAAAGATGCCTTGGCTGCAGTTCGGAATACAACTCAGGCAGCTGCACGCATACAAGCTGCTTTCCGCGCACATTCTTTCAGGCAGAAGCAGCAGAGAGAAGCTGATGCTCCTTATGTAGATGAGTATGGTATCAGTTCAGATGACATTCAGGAACTTTCAGCAATGTCAAAGCTGGCCTTTCGCAATTCAGCTGCTTTATCTATCCAGAAAAAATATCGAGGTTGGAAAGGTCGTAAGGATTTCCTAACACTACGTCAGAAAGTTGTAAAGATACAGGCTCATGTGAGAGGATATCACGTTAGGAAGAATTACAAGGTGATCTGTTGGGCTGTTGGCATTCTAGACAAGGTTATACTGCGGTGGCGCCGAAGAGGAGCTGGTTTGCGAGGTTTTCGGCCTGAATCAGAGCCCATTGATGAAAATGAGGATGAAGACATTCGTAAGGCGTTCCGCAGGCAGAAAGTGGATGGAGCCATTAATGAGGCTGTATCAAGGGTGCTGTCCATGGTGGAGTCTCCCGAAGCACGTGAACAATATCACCGCGTGCTTGAAAGATTCCATCAAGCTAAGTTTTTGCAGTCTGAGCTTGGCATTGGTGGCACAGGGAGTGAAACATCATCTATTGGCGATGTTCTAAAGACATCAAAGTCTATTGGCGATGTTTTTGATATGGACGAGGATGATATATTCCAGTTCCCCTAG 2997 0.4311 MSGFDFNDLLKEAQIRWLKPAEVLFILQNYEKHQLTQEPPQKPTSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGTVETINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYREISEGRHSPGSNSLLSSGSTQTQSPSSYNSQIPGSTSAVSELYDSPQNVCSPGSVEVSSEVVMKSNVREHLDRINGIGDFGNSSELEVSQALRRLEEQLSLNDDSLEAIDAFQSQNENMNGLETLEYERKMSKQDQHAVLLSGPEYTVHDQHYTGYAGCSTDDLMLPQDAGDNREHYHHQSTVEGRDTLSWEEIMEFCKSSSGVDSKEKHKSYGNERPLSSSGRGAAEKQQNSHWLNVDGTNSESSSILLPSEVENLNFPEYKTNTHAVNSDYYRMLFDEGQIEVPLESGPSLTLAQKQRFTICEISPEWGFSSETTKVIIAGSFLCHPSECAWTCMFGDIEVPVQIIQEGVICCQAPPHPPGKVTLCITSGNRESCSEVREFEYHAKTSSCTHCNLSQTEATKSPEELLLLARFVQMLLFDPLMHRRDGIESGIDLLIKSKADEDSWDCIIEALLFGSGTSSSTVDWLLQELLKDKLHQWLSSRSREGCESFGCSLSKKEQGMIHMIAGLGFEWALNPILNTGVSINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSPQDPTGKTAASIASTSGHKGLAGYLSEVAVTSHLSSLTLEESELSKGSAEVEAEITVNNISKGGLAASEDQIPLKDALAAVRNTTQAAARIQAAFRAHSFRQKQQREADAPYVDEYGISSDDIQELSAMSKLAFRNSAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYHVRKNYKVICWAVGILDKVILRWRRRGAGLRGFRPESEPIDENEDEDIRKAFRRQKVDGAINEAVSRVLSMVESPEAREQYHRVLERFHQAKFLQSELGIGGTGSETSSIGDVLKTSKSIGDVFDMDEDDIFQFP* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1481 998 MobiDBLite consensus disorder prediction 326 364 - -
Vvi1g1481 998 ProSiteProfiles IQ motif profile. 775 801 IPR000048 GO:0005515
Vvi1g1481 998 MobiDBLite consensus disorder prediction 686 703 - -
Vvi1g1481 998 SMART CG_1_2 9 127 IPR005559 GO:0003677
Vvi1g1481 998 CDD IPT 426 510 - -
Vvi1g1481 998 Gene3D - 539 722 IPR036770 -
Vvi1g1481 998 FunFam Calmodulin-binding transcription activator 2 420 514 - -
Vvi1g1481 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 877 IPR027417 -
Vvi1g1481 998 FunFam Calmodulin-binding transcription activator 2 826 873 - -
Vvi1g1481 998 Gene3D Immunoglobulins 420 515 IPR013783 -
Vvi1g1481 998 SMART ANK_2a 657 686 IPR002110 GO:0005515
Vvi1g1481 998 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 955 - -
Vvi1g1481 998 MobiDBLite consensus disorder prediction 684 703 - -
Vvi1g1481 998 SUPERFAMILY Ankyrin repeat 626 719 IPR036770 -
Vvi1g1481 998 ProSiteProfiles IQ motif profile. 849 873 IPR000048 GO:0005515
Vvi1g1481 998 Pfam IQ calmodulin-binding motif 828 846 IPR000048 GO:0005515
Vvi1g1481 998 Pfam IQ calmodulin-binding motif 851 870 IPR000048 GO:0005515
Vvi1g1481 998 SUPERFAMILY E set domains 426 509 IPR014756 -
Vvi1g1481 998 Pfam IPT/TIG domain 427 509 IPR002909 -
Vvi1g1481 998 ProSiteProfiles Ankyrin repeat region circular profile. 657 683 - -
Vvi1g1481 998 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Vvi1g1481 998 MobiDBLite consensus disorder prediction 340 364 - -
Vvi1g1481 998 ProSiteProfiles IQ motif profile. 826 855 IPR000048 GO:0005515
Vvi1g1481 998 ProSiteProfiles CG-1 DNA-binding domain profile. 6 132 IPR005559 GO:0003677
Vvi1g1481 998 MobiDBLite consensus disorder prediction 131 178 - -
Vvi1g1481 998 SMART iq_5 774 796 IPR000048 GO:0005515
Vvi1g1481 998 SMART iq_5 825 847 IPR000048 GO:0005515
Vvi1g1481 998 SMART iq_5 848 870 IPR000048 GO:0005515
Vvi1g1481 998 Pfam Ankyrin repeats (3 copies) 644 717 IPR002110 GO:0005515
Vvi1g1481 998 Pfam CG-1 domain 12 125 IPR005559 GO:0003677
Vvi1g1481 998 FunFam Calmodulin-binding transcription activator 4 isoform A 539 722 - -
Vvi1g1481 998 Gene3D - 826 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1481 Vvi-Chr1 21200958 21215257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1481 4 998 CAMTA Transcription Factor Family AT1G67310 51.257 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vvi1g1481 CG-1 1.2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1481 K21596 - vvi:100260828 1918.66