Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1478 ATGAGTAGCTTGGGCAAGCTTAACTTCTCCTATAACAACCTTGAGGGCAAATTGGACAAGGAATTCTTGCACTGGCCAGCAGAGACGTTCATGGGAAACCTGCGTCTTTGTGGAGGGCCTCTCGGCCGCTGCAACAGTGAGGAATCCAGTCATCATAACTCAGGCCTAAAGTTATCATCTGTGGTGATAATATCAGCATTTTCAACCATTGCTGCAATTGTTCTACTGATGATTGGAGTTGCCCTGTTTCTTAAAGGCAAGCGGGAGTCCCTCAACGAAGTGAAGTGTGTTTACTCTTCCAGTTCTTCCATAGTACACCGAAGACCACTCCTCCCCAACGCTGCTGGGAAGCGAGATTTCAAATGGGGAGACATTATGCAAGCTACAAACAATCTGAGTGACAATTTTATAATTGGCTCAGGAGGGTCTGGAACGATCTACAAGGCTGAGTTATCCAGTGAAGAAACAGTGGCAGTGAAGAAGATACTGAGGAAAGATGATCTCCTGCTGAATAAAAGCTTTGAAAGAGAAATTAGGACCCTGGAAAGGGTTAGGCATAGGCACCTAGCAAAGTTGCTGGGTTGTTGTGTCAACAAAGAAGCAGGCTTTAATCTGTTGGTATACGAGTACATGGAGAATGGAAGCTTATGGGATTGGCTGCACCCAGAATCAGTGAGTAGCAAGAAAAGGAAGAGCCTTGACTGGGAGGCGAGGTTAAGGGTTGCAGCGGGATTAGCTAAGGGAGTGGAGTATCTCCACCATGACTGTGTCCTCAGGATCATTCACAGGGACATCAAGTCCAGCAATGTGTTGCTTGACTCTAATATGGAGGCACATTTGGGGGATTTTGAGCTGGCAAAGACTCTGGTTGAGAATCACAACTCCTTCAACACCGACTCAAACTCATGGTTCGCTGGGTCTTACGGTTATATTGCTCCAGAATATGCTTATTCATTGAAGGCAACGGAGAAGAGTGATGTTTATAGTATGGGTATCGTGCTGGTTGAGCTAGTGAGTGGAAAGATGCCAACAGACGAAATTTTTGGGACGGATAAAATGGTGAGGTGGGTTGAGTCGCACATTGAAATGGGAGAATCGAGCCGAACGGAGTTGATTGATTCAGCATTGAAGCCAATTCTACCAGATGAAGAATGCGCAGCATTCGGAGTGCTTGAGATCGCACCGCAATGCACAAAAACTACCCCAGCAGAAAGGCCGTCTTCTCGCCAAGTTTGCGATTCCCTAGTCCATTTGTCCAACAATAGAAATAGAATGGTGGGCTGCTATAAGAACCCCCATTGA 1302 0.4624 MSSLGKLNFSYNNLEGKLDKEFLHWPAETFMGNLRLCGGPLGRCNSEESSHHNSGLKLSSVVIISAFSTIAAIVLLMIGVALFLKGKRESLNEVKCVYSSSSSIVHRRPLLPNAAGKRDFKWGDIMQATNNLSDNFIIGSGGSGTIYKAELSSEETVAVKKILRKDDLLLNKSFEREIRTLERVRHRHLAKLLGCCVNKEAGFNLLVYEYMENGSLWDWLHPESVSSKKRKSLDWEARLRVAAGLAKGVEYLHHDCVLRIIHRDIKSSNVLLDSNMEAHLGDFELAKTLVENHNSFNTDSNSWFAGSYGYIAPEYAYSLKATEKSDVYSMGIVLVELVSGKMPTDEIFGTDKMVRWVESHIEMGESSRTELIDSALKPILPDEECAAFGVLEIAPQCTKTTPAERPSSRQVCDSLVHLSNNRNRMVGCYKNPH* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1478 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Vvi1g1478 433 Pfam Protein kinase domain 137 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1478 433 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 415 - -
Vvi1g1478 433 ProSiteProfiles Protein kinase domain profile. 132 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1478 433 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 94 210 - -
Vvi1g1478 433 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1478 433 Gene3D Phosphorylase Kinase; domain 1 92 210 - -
Vvi1g1478 433 SUPERFAMILY Protein kinase-like (PK-like) 114 416 IPR011009 -
Vvi1g1478 433 Gene3D Transferase(Phosphotransferase) domain 1 211 430 - -
Vvi1g1478 433 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Vvi1g1478 433 Gene3D Ribonuclease Inhibitor 1 53 IPR032675 -
Vvi1g1478 433 FunFam Leucine-rich repeat receptor-like protein kinase 211 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1478 Vvi-Chr1 21184287 21185707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1478 1 426 Receptor kinase-like Gene Family AT1G75820 37.875 1.55e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi1g1478 Pkinase 4.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1478 - - vvi:100250573 873.233