Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1474 ATGGTGGCTCTACGATTCAAATTCATCAAATGGCTGTGCTGTGATATTACACAAAGAAAGCAGTTGATTAGGGAAATGGAGTGTAATAAAGACGAGGCTACCAGAGCAAAAGAAATCGCAGAGAAGAAGTTTATAGCACGGGACATTGCTGGAGCAAAGAAATTAGCTTTGAAGGCTCAAAATTTGTTTCCTGGTCTTAATGGTCTTCCCCAAATGTTATTAACACTTGATGTGCATATTTCTGCGGAAAACAAAATAAATGGCGAAGCGGATTGGTATGGGATACTTGGTGTGAATCCACTAGCAGACGATGACACCGTGAGGAAGCAATATAGGAAGTTGGCCCTGATGCTTCATCCTGACAAGAACAAATCTATAGGGGCAGATGGGGCATTTAAACTTATTTCAGAAGCATGGAGTTTGTTGTCTGATAAGACTAAGAGAATCGCATTCGATCAGAAGAGGAATGTGAAAGCAGGTCAGCAGAAAGTTCAGCCTCCAAGTGGAGGTCCATCGTCATCCGCTGCTGCTAATGGTTTTTACAGTTTCACTAAAAGTAGGACTACAAACACAAAAGCTCATAAGAATGCCACTCAGATGGGTCCCTCTTCTGCCCCTGCTTCAGCTCATAAGCTAAAACCCAATACCTTTGGGACAGTCTGCCATCGGTGCAAAATGCAATACGAGTACCTCAGAATTTATCTCAACCACAATCTGCTTTGCCCCAATTGCCATGAGCCTTTTTTTGCAGTAGAAACACCACCACCACCTTCAAATGGCTCTAAATCATCCAATCCTCAATGA 804 0.4266 MVALRFKFIKWLCCDITQRKQLIREMECNKDEATRAKEIAEKKFIARDIAGAKKLALKAQNLFPGLNGLPQMLLTLDVHISAENKINGEADWYGILGVNPLADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKRIAFDQKRNVKAGQQKVQPPSGGPSSSAAANGFYSFTKSRTTNTKAHKNATQMGPSSAPASAHKLKPNTFGTVCHRCKMQYEYLRIYLNHNLLCPNCHEPFFAVETPPPPSNGSKSSNPQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1474 267 PANTHER BNAC03G44070D PROTEIN 26 264 - -
Vvi1g1474 267 MobiDBLite consensus disorder prediction 158 177 - -
Vvi1g1474 267 SMART dnaj_3 90 147 IPR001623 -
Vvi1g1474 267 SUPERFAMILY Chaperone J-domain 84 149 IPR036869 -
Vvi1g1474 267 MobiDBLite consensus disorder prediction 190 212 - -
Vvi1g1474 267 PRINTS DnaJ domain signature 111 126 IPR001623 -
Vvi1g1474 267 PRINTS DnaJ domain signature 127 147 IPR001623 -
Vvi1g1474 267 PRINTS DnaJ domain signature 93 111 IPR001623 -
Vvi1g1474 267 CDD DnaJ 91 144 IPR001623 -
Vvi1g1474 267 Pfam DnaJ domain 91 152 IPR001623 -
Vvi1g1474 267 Coils Coil 23 43 - -
Vvi1g1474 267 ProSiteProfiles dnaJ domain profile. 91 155 IPR001623 -
Vvi1g1474 267 MobiDBLite consensus disorder prediction 153 177 - -
Vvi1g1474 267 MobiDBLite consensus disorder prediction 190 205 - -
Vvi1g1474 267 Gene3D DnaJ domain 88 201 IPR036869 -
Vvi1g1474 267 ProSitePatterns Nt-dnaJ domain signature. 132 151 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1474 Vvi-Chr1 21126851 21128487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1474 29 257 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.468 5.69e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1474 - - vvi:100257476 496.123