Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1473 ATGGAAAACAAAATAAATGGTGAAGCGGATTGGTATGGGATACTTGGTGTGAATCCACAAGCAGACGATGACACGGTGAGGAAGCAATATAGGAAGTTGGCCCTGATGCTTCATCCTGACAAGAACAAATCTATAGGGGCAGATGGGGCATTTAAACTTATTTCAGAAGCATGGAGTTTGTTGTCTGATAAGACTAAGAGAATAGCATACGATCAGAAGAGGAATGTGAAAGCAGGTCAGCAGAAAGTTCAGCCTCCAAGTGGAGGTCCATCGTCATCCGCTGCTGCTAATGGTTTTTACAGTTTCACTAAAAGTAGGACTACAAATACAAAAGCTCATAAGAATACCACTCGGATGGGTCCCTCTTCTGCCCCTGCTTCAGCTCATAAGCCAAAACCCAATACCTTTTGGACAGTCTGCCATCGGTGCAAAATGCAATACGAGTACCTCAGAATTTATCTTAACCACAATCTGCTTTGCCCCAATTGCCATGAGCCTTTTTTTGCAGTAGAAACACCACCACCGCCTTCAAATGGCTCTAAATCATCCAATCCTCAATGGACTTTCCCGCAACAGCAACAGAGCTCAAATCACCAAGCAGCAAGCAAGAGCACACTTAATCAGGGAAAGAAGAATGCAACCTCTTCAAATGTGGGAGCAGGGGGCTTTAATGCTCCTGATTCATTTAACCACACCAATTTCCAATGGGGTCCATTCTCAGGAACATCTTGTGCTTCAAATGCTGCACAGGCTGCAAGTGTGGTTCAGAAGGCATATGCAAATGTAAAGAGAGAGCGTGAGGAGGCACAGGCAGCCTCCAAAAGAGAGGAGGCCCTGCGGAGGAAGCATCACGCATCTAAGAAGATGAGTGGTGGTTCATCTGCTGGGATGTCTAACTCTGCAAAGAGAAGAAGAGGCATGGATGATGTTGGTGCTTCCAGCTATGGAAAGGACATCACAAATCGAATGGGTCCAGGAACTGGAGGAGCTGGTGCAACTGGTTTACAAGGTAATCTTGAAACACGTGCAGTTAATGGAATCAATAAGCCTAATGGTTCAAGGGAGGTCTCCCACACTGAAATGCAGAATATACTGGTGGAGAAGGCTAGGAAGGAAATTCGAAATAAATTGAATGAATGGAACTCGGCTACTGTAACCAAAACTGCAGTAAAAGGGGTGGAGAATGGGAATGAGAAAGCAAATGAAAAAGAGGAAAAAATTGAAAAACCTTTAGCAAATGGCAATGTGCAAGATCAAAACAGGCCTGGTGAGTCTGCTAATACCAAGACTGGAGTCCATGCCTTCAAGTCTTTTCCTGACACTTGCGGTGGAAATACAGATATAGAGACCATTGAACCAATGTCAATTAATGTTCCTGATCCTGATTTTCATGATTTTGACAAGGATCGGACAGAAAGATGTTTTGGTGATAACCAGGTATGGGCTGCATATGATGATGATGATGGGATGCCTAGATATTATGCTATGATTCATAGTGTGATTTCCGTAAACCCATTCAAGATGCGTATTAGTTGGCTTAACTCAAAAACCAACAGTGAACTGGGCCCACTAAACTGGGTTGGTTCTGGTTTCTCAAAAACTTGTGGGGATTTCAGAGTTGGCAGATATGAAGTCAATAACTCTCTTAATTCTTTCTCACACAAGGTTAGGTGGGCAAAAGGCATGCGCGGTGCCATTCGCATTTTTCCTAGAAAGGGGGATGTGTGGGCTATCTATAGGAATTGGTCCCCTGACTGGAATGAGCTAACAGCAGATGAAGTAATACACAAGTATGATATGGTGGAAGTGCTTGAAGACTATGATGAAGAGCTAGGTGTAACTGTCACTCCCCTAGTTAAAGTTGCTGGCTTCAAGACAGTGTTTCACAGGCATTTGGACCCCAGAGAAGTCAGGAGGATACCAAGAGAGGAGATGTTTCGGTTCTCACATCATGTACCTTCATACTTGCTTACAGGTCAAGAAGCTCCAAGTGCTCCCAAGGGTTGCCGGGAGCTGGACCCTGCGGCTACTCCATTGGAACTTCTTCAGGTCATAACAGATGTTAGGGAAGAAGAGATTGTGGAAAATGACAAAATTAGGGAAGAAAATATAGTAAATAAGACCACAAAAGCTAATGAAAAAGAAATTGAAGAGAATTCAGAGAAAGCTACAGAAAAAGAGATTTCAGGGGATTCCAAAGATATGCAGGAGGTAGAAATTCTGGAGGTTGCCAAAGAAAAGCAAGACAAGAAAGTGGAGCATGCTGAAGAAAAGCCAATTAGCTGA 2286 0.4357 MENKINGEADWYGILGVNPQADDDTVRKQYRKLALMLHPDKNKSIGADGAFKLISEAWSLLSDKTKRIAYDQKRNVKAGQQKVQPPSGGPSSSAAANGFYSFTKSRTTNTKAHKNTTRMGPSSAPASAHKPKPNTFWTVCHRCKMQYEYLRIYLNHNLLCPNCHEPFFAVETPPPPSNGSKSSNPQWTFPQQQQSSNHQAASKSTLNQGKKNATSSNVGAGGFNAPDSFNHTNFQWGPFSGTSCASNAAQAASVVQKAYANVKREREEAQAASKREEALRRKHHASKKMSGGSSAGMSNSAKRRRGMDDVGASSYGKDITNRMGPGTGGAGATGLQGNLETRAVNGINKPNGSREVSHTEMQNILVEKARKEIRNKLNEWNSATVTKTAVKGVENGNEKANEKEEKIEKPLANGNVQDQNRPGESANTKTGVHAFKSFPDTCGGNTDIETIEPMSINVPDPDFHDFDKDRTERCFGDNQVWAAYDDDDGMPRYYAMIHSVISVNPFKMRISWLNSKTNSELGPLNWVGSGFSKTCGDFRVGRYEVNNSLNSFSHKVRWAKGMRGAIRIFPRKGDVWAIYRNWSPDWNELTADEVIHKYDMVEVLEDYDEELGVTVTPLVKVAGFKTVFHRHLDPREVRRIPREEMFRFSHHVPSYLLTGQEAPSAPKGCRELDPAATPLELLQVITDVREEEIVENDKIREENIVNKTTKANEKEIEENSEKATEKEISGDSKDMQEVEILEVAKEKQDKKVEHAEEKPIS* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1473 761 MobiDBLite consensus disorder prediction 175 224 - -
Vvi1g1473 761 MobiDBLite consensus disorder prediction 73 131 - -
Vvi1g1473 761 PANTHER BNAC03G44070D PROTEIN 2 678 - -
Vvi1g1473 761 MobiDBLite consensus disorder prediction 77 123 - -
Vvi1g1473 761 MobiDBLite consensus disorder prediction 266 327 - -
Vvi1g1473 761 SMART dnaj_3 9 66 IPR001623 -
Vvi1g1473 761 MobiDBLite consensus disorder prediction 710 761 - -
Vvi1g1473 761 MobiDBLite consensus disorder prediction 173 224 - -
Vvi1g1473 761 Pfam Domain of unknown function (DUF3444) 453 661 IPR024593 -
Vvi1g1473 761 ProSiteProfiles dnaJ domain profile. 10 74 IPR001623 -
Vvi1g1473 761 SUPERFAMILY Chaperone J-domain 7 86 IPR036869 -
Vvi1g1473 761 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vvi1g1473 761 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vvi1g1473 761 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vvi1g1473 761 Coils Coil 706 726 - -
Vvi1g1473 761 Gene3D DnaJ domain 7 119 IPR036869 -
Vvi1g1473 761 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vvi1g1473 761 Coils Coil 252 282 - -
Vvi1g1473 761 CDD DnaJ 10 63 IPR001623 -
Vvi1g1473 761 Coils Coil 738 758 - -
Vvi1g1473 761 Pfam DnaJ domain 10 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1473 Vvi-Chr1 21118398 21121745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1473 2 234 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 29.752 2.20e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1473 - - vvi:104877364 1448.72