LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1471	ATGATAATTCGACTCCAATTTTTTCCTCAAACTTTAATCCCTCTTCACTCTACTCTAAGCCCTGTTAAAAACCCTAACCGTAGCCCTAACTGTACAAAGCAATCTCAATTGCTCGATGGCTTCAGGAACTCACTTTCCCCTCATCCAAACACCCCCATTTCCGACTCCGGCCTCCGTTTCCGTCAAAAACTACTCTACATTGAAAATCTCAAAGTCAATTCCTCCAAAGCCCTCCATAAAAACCCTAATTTCCGATCAGCTCCTCTCGACACCGTGAAATCCGTTGAGAAATGCCTCTGCTCGATGGGCATTCAACGCTCTGCATTGGGTCGAATCTTGGACATGCACCCACAGCTCCTAACCAGTGACCCCTACAATGATCTTTATCCTGTATTTGATTTTCTATTTAACGAAGTTCATATTCCATTCCCCGATATTCAAAAATCCATAATTCGATGTCCTAGGTTGTTGCTTTGTAGCGTAGATGATCAACTGAGACCCACATTCTATTTCCTGAAGAAACTAGGGTTTGCTGGACCACATGCAATAACATGCCAAAACACATTGTTGTTAGTATCCAGTGTAGAAGATACTCTTGTGCCCAAGCTTGAGTATTTGCAAAATTTGGGGTTCTCATACAAGGAGGTGGTGAAAATGGTGGTGAGATCACCAGGATTGTTGACTTTCAGTATTGAGAAAAATTTTCAGCCTAAAGTGGAGTATTTCTTGGATGAGATGAAGGGGGATTTGGCAGAGCTAAAGAGATTTCCACAGTATTTTTCATTTAGTTTGGAGGGGAAGATAAAACCTCGGCATAGGCTTTTGGCCGAGCATGGGTTTTCGCTTCCATTGCCAGAGATGTTGAAGGTTAGTGATGGCGAGTTCAACTTGCGTTTGATCGAGATGCGATTGCAACTGGCTGACGAGAGATATTTGGACTGTGTCTCAGAAAATCAGGACGGTAACAAATGGAGGCATGACTTAACTAGACGGTGA	996	0.4297	MIIRLQFFPQTLIPLHSTLSPVKNPNRSPNCTKQSQLLDGFRNSLSPHPNTPISDSGLRFRQKLLYIENLKVNSSKALHKNPNFRSAPLDTVKSVEKCLCSMGIQRSALGRILDMHPQLLTSDPYNDLYPVFDFLFNEVHIPFPDIQKSIIRCPRLLLCSVDDQLRPTFYFLKKLGFAGPHAITCQNTLLLVSSVEDTLVPKLEYLQNLGFSYKEVVKMVVRSPGLLTFSIEKNFQPKVEYFLDEMKGDLAELKRFPQYFSFSLEGKIKPRHRLLAEHGFSLPLPEMLKVSDGEFNLRLIEMRLQLADERYLDCVSENQDGNKWRHDLTRR*	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1471	331	SMART	mt_12	110	142	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	SMART	mt_12	250	281	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	SMART	mt_12	75	105	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	SMART	mt_12	147	178	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	SMART	mt_12	181	212	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	SMART	mt_12	217	249	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	Pfam	mTERF	81	295	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	Gene3D	Transcription termination factor 3, mitochondrial	64	306	IPR038538	-
	Vvi1g1471	331	PANTHER	CGI-12 PROTEIN-RELATED	74	301	IPR003690	GO:0003690\|GO:0006355
	Vvi1g1471	331	FunFam	BnaA06g33880D protein	61	306	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1471	Vvi-Chr1	21096278	21105659	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Vvi1g1471		mTERF	4.8e-37	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1471	K15032		-	vvi:100247222	673.315