Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1469 ATGGGAACTCACCTCCAAGCTTCTGCTCAAGATAATGAGCACATTTTCAGGAGCCAGCATCAAGCAGTTCCAGTGCCAGATAACATGACACTGCCGGACTTTGTGCTTCAGGATGCTGAATTGTATGCTGAAAAGGTGGCATTTGTGGAGGCTGTGACAGGGAAGGAGTATACTTATGGTGAAGTTGTCAGAGATGTAAGGAGGTTTGCTAAGGCCTTGAGGTCAATTGGGCTGAGGAAGGGGAGAGTGGTGGTTGTTGTACTGCCAAATGTGGCTGAGTACGCCATCGTCGCGCTGGGAATAATGGCCGCTGGCGGCGTGTTTTCAGGCGCAAACCCAGCTGGGCATGCTTCAGAGATTAAGAAGCAGGTGGAGGCTGCTGATGCCAAGCTTGTTGTCACAAATGGGGCCATGTATGAGAAGGTGAAAAGCCTGGAGCTACCAGTAATTGTGATGGGGGAAGAACATGTTGCAGGCGCCATAAACTGGGGTGAGCTGCTTGAAGCAGCAGACCGGGCAAACACCGATACAATCAGCGAGGATGTGCACCAGAATGATCTATGTGCCCTCCCATTCTCATCAGGGACTACAGGAATTTCAAAGGGAGTAATGCTCACTCACCGGAATCTGGTAGCTAACCTCTGCTCCACCCTCTTCAGTGTTGGGCCAGAGATGGTGGGACAAATCACTATTCTAGGCCTAATGCCATTCTTTCACATATATGGAATCACTGGAATATGCTGTGCCACACTTAGGAACAAGGGGAAGGTAGTGGTGATTGGGAGGTATGAGCTTAGAACTTTTCTGAATGCATTGATCACACATGAGATCACATTTGCCCCAATTGTGCCGCCAATCATTTTGGCATTGGTTAAGAATCCGATCGTGGAGGAGTTTGATCTCAGCAGGCTCAAGCTTAGGGCAGTCATGACTGCTGCAGCTCCCCTGGCACCTGAGCTCCTCTCTGCCTTTGAGAAGAAGTTCCCTAGTGTCCAAGTCCAAGAGGCATATGGACTGACTGAGCACAGCTGCATTACACTTACTCATGGAGACCCCACTAAAGGCCATGCCACTGCTAAGAAAAACTCAGTTGGGTTCATCCTTCCCAACATGGAGCTCAAGTTCATCGATCCTGAAACCGGTATCTCCCTCCCCAAGAACACCCCTGGTGAAATCTGTGTTAGAAGCCAATGTGTAATGCAAGGCTACTATAAGAACGAGGAGGAGACAGCTCGAACAATTGACAACAATGGATGGCTCCATACTGGCGACATTGGCTACATAGACGATGATGGGGACGTCTTTGTGGTTGATCGCATCAAAGAGTTGATCAAGTACAAAGGCTTCCAAGTAGCTCCTGCTGAGCTAGAGGCCATCCTTCTAAGTCACCCTTCAGTTGAAGACACTGCTGTTGTATCACTGCCTGATGAAGAGGCAGGGGAGATTCCAGCAGCATGTGTAGTGCTCAACCCAGAAGCAAAAGAGACAGAGGAAGAAATTGTGAAGTATGTTGCCTCTAATGTGGCACAGTATAAGAGAGTGAGGGTGGTGCACTTTGTGGAGACTATCCCAAAATCACCATCTGGGAAAATTATGAGAAGGCTTCTTAGAGAAAAGATGCTAGAAAAAATGAAGAACAACACCAAATCTGGTGCTATATTACCCTAA 1668 0.4826 MGTHLQASAQDNEHIFRSQHQAVPVPDNMTLPDFVLQDAELYAEKVAFVEAVTGKEYTYGEVVRDVRRFAKALRSIGLRKGRVVVVVLPNVAEYAIVALGIMAAGGVFSGANPAGHASEIKKQVEAADAKLVVTNGAMYEKVKSLELPVIVMGEEHVAGAINWGELLEAADRANTDTISEDVHQNDLCALPFSSGTTGISKGVMLTHRNLVANLCSTLFSVGPEMVGQITILGLMPFFHIYGITGICCATLRNKGKVVVIGRYELRTFLNALITHEITFAPIVPPIILALVKNPIVEEFDLSRLKLRAVMTAAAPLAPELLSAFEKKFPSVQVQEAYGLTEHSCITLTHGDPTKGHATAKKNSVGFILPNMELKFIDPETGISLPKNTPGEICVRSQCVMQGYYKNEEETARTIDNNGWLHTGDIGYIDDDGDVFVVDRIKELIKYKGFQVAPAELEAILLSHPSVEDTAVVSLPDEEAGEIPAACVVLNPEAKETEEEIVKYVASNVAQYKRVRVVHFVETIPKSPSGKIMRRLLREKMLEKMKNNTKSGAILP* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1469 555 FunFam 4-coumarate--CoA ligase 2 442 543 - -
Vvi1g1469 555 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 539 - -
Vvi1g1469 555 Pfam AMP-binding enzyme C-terminal domain 455 530 IPR025110 -
Vvi1g1469 555 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Vvi1g1469 555 SUPERFAMILY Acetyl-CoA synthetase-like 10 544 - -
Vvi1g1469 555 CDD 4CL 25 536 - -
Vvi1g1469 555 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 441 - -
Vvi1g1469 555 Gene3D - 13 441 IPR042099 -
Vvi1g1469 555 Gene3D - 442 545 IPR045851 -
Vvi1g1469 555 Pfam AMP-binding enzyme 38 446 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1469 Vvi-Chr1 21076452 21078724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1469 10 541 Monolignol Biosynthesis Gene Families AT1G62940 75.564 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1469 K01904 - vvi:100264367 1054.66