Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1468 ATGATTTCTTTCTCAATGATGGAGTGGAATGCAAAAGCTCCCGTACAGTGGGACTGGGAGAACCTTGACATTTTCAATGCAAAATCAACTGAAATTCCAAAAAAGTTACAATCAGACTGGGAAATTGAAGGAGAAGGAGGAATTGACACTGGTTCTTTCTATTCATCTGGATGTGGTGCTGGTAGTGGTGGTTCTGGCTCTGATTTGGGACATGCATATTCATCAAAGAGCTCAAAATCAGCTTCAATTGATTCTTCATCAAAGGTGGGAATAAAGACATCCAACTTCACTTTTGAGGCTTTCCAAGATTTTTCTCAAGATTTTAACAAGAAGAGAGATTTGGAGAGGGCTGAGCCAACTGGAAGTTCTCCAAACCTTGAAGCCTCGATTGGCTCTGGTGAACCTTTAATTGGTCTAAAGCTTGGTAAAAGGACATACTTCGAGGATGTTTCTGCAGGGGCCAATGCTAAGGGCTCAGTGTTTTCTGTGATTCCCATATCATCTGATACCACAGCAAAGAGATCCAGGTTATCTTGTCAGAATGCACATGTCTCGCGCTGTCAAGTTGAAGGATGCAACCTTGACCTTTCAACAGCCAAAGATTACCATCGCAAACATAGAGTTTGTGAAAGTCATACCAAATGCCCAAAGGTCATTGTAGGTGGTCTGGAGCGCCGTTTTTGCCAACAGTGTAGCAGGTTCCATAGTTTGTCAGAGTTTGATGAAAAAAAGAGAAGCTGTCGCAGGCGTCTTTCTGATCACAATGCACGCCGGCGCAAACCACAACCAGAAGGGATCCAGTCAAATTCGGCAAGGCTTTCATCATTCTATGGTGGGAAGCAGCAAATGAGTCTTGTGTTGAGCTCGGTCCCCATTGTTCATACAAGGCCTGCTGTAAATCCTTCATGGGAAGGCACATGCAGCAAGTTCACACAAACAAAAGGGTTAGTAAGGCCTGGTAACACAGGAGGTATCGACCGGCAGCTGCATTTGCCTGGCAGTGAACTGCAGAATGGCATTAGTACGCTTTGTCATGATTCCAGTAGGCTTTTGCACTCTAAGGGTGCAATAGCTGAGGTTCTCAATCAAGGTCTAGGGGATTCTATGATCTCTTCCAACTTGGACACATCACAGGATCTTCGTCGTGCTCTCTCTCTTCTGTCAACGAATTCTTGGGGCTCATGTGAAACACAACCAATTCCATCTGACCACCCTATGCATGTAAACCAAACCAGCATGCCTCAATCTATTATGCATGCAGTGTCCCAAGGTATGTTACATTCAACCTCAGAACACTGGAGGACCGAGCTTCCCTCAACTGATTCCCGGGTGCATATCTTGCCTTCACAAGGTGATGGTAACACCCACTTTCAAGAGTTCAAGCTGTTCAAAGCGCCATACGAGTCTGGCTTTTCTTCTGGTCAGTTGAACTGA 1434 0.4505 MISFSMMEWNAKAPVQWDWENLDIFNAKSTEIPKKLQSDWEIEGEGGIDTGSFYSSGCGAGSGGSGSDLGHAYSSKSSKSASIDSSSKVGIKTSNFTFEAFQDFSQDFNKKRDLERAEPTGSSPNLEASIGSGEPLIGLKLGKRTYFEDVSAGANAKGSVFSVIPISSDTTAKRSRLSCQNAHVSRCQVEGCNLDLSTAKDYHRKHRVCESHTKCPKVIVGGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQPEGIQSNSARLSSFYGGKQQMSLVLSSVPIVHTRPAVNPSWEGTCSKFTQTKGLVRPGNTGGIDRQLHLPGSELQNGISTLCHDSSRLLHSKGAIAEVLNQGLGDSMISSNLDTSQDLRRALSLLSTNSWGSCETQPIPSDHPMHVNQTSMPQSIMHAVSQGMLHSTSEHWRTELPSTDSRVHILPSQGDGNTHFQEFKLFKAPYESGFSSGQLN* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1468 477 FunFam Squamosa promoter-binding-like protein 14 178 248 - -
Vvi1g1468 477 Pfam SBP domain 187 260 IPR004333 GO:0003677
Vvi1g1468 477 Gene3D - 182 248 IPR036893 GO:0003677|GO:0005634
Vvi1g1468 477 SUPERFAMILY SBT domain 185 265 IPR036893 GO:0003677|GO:0005634
Vvi1g1468 477 ProSiteProfiles Zinc finger SBP-type profile. 184 261 IPR004333 GO:0003677
Vvi1g1468 477 MobiDBLite consensus disorder prediction 251 270 - -
Vvi1g1468 477 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 419 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1468 Vvi-Chr1 21064737 21069510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1468 7 441 SBP-box Gene Family AT5G43270 43.537 6.88e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi1g1468 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1468 - - vvi:100254075 933.324