Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1458 ATGGCCTCTGTCTGTGCCTCCTCCGCCATGGCTGCTGTTGCCACCATCTCTCCCAGTTCTCAGAAGACTGGGTCTGTTGTGGGAGCAACCAAGGCCTCTTTTCTTGGGGGGAAGAGACTGAGCCTGAAGAAGTTCACGGCACCGGCAGCTGGGACGCGGTCTTTTACTGTATCCGCGGCGGCGGCAGATCCTAACAGGCCTCTTTGGTTCCCAGGCAGCACCCCTCCTCCATGGCTTGATGGCAGCCTTCCTGGAGACTTTGGTTTCGATCCCCTTGGCCTTGGATCTGATCCAGAGACACTGAAATGGATGGTTCAGTCAGAGATAGTGCACTGCAGATGGGCAATGTTGGGAGCAGCTGGAATTTTCATCCCAGAGTTCCTAACAAAAATTGGGATACTAAACACCCCATCCTGGTACACTGCTGGAGAATTGGAGTACTTCACCGACAAAACCACACTCTTCATTGTTGAGATGATTTTCATCGGTTGGGCTGAGGGGAGAAGATGGGCTGACATCATCAAGCCTGGGTGCGTCAACACTGACCCCATTTTCCCCAACAACAAGCTCACCGGGACTGATGTTGGCTACCCAGGTGGGCTCTGGTTCGACCCTCTTGGCTGGGGAAGCGGTTCGCCCGACAAGATCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGATTGGCTATGTTGGCTGTGATGGGTGCTTGGTTCCAAGCCATCTACACTGGCACTGGCCCCATTGACAACCTCTTTGCCCACCTTGCTGATCCCGGACATGCCACCATTTTTGCTGCTTTCACCCCCAAGTGA 816 0.538 MASVCASSAMAAVATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVSAAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAFTPK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1458 271 SUPERFAMILY Chlorophyll a-b binding protein 61 269 - -
Vvi1g1458 271 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 269 IPR001344 GO:0009765|GO:0016020
Vvi1g1458 271 FunFam Chlorophyll a-b binding protein, chloroplastic 76 261 - -
Vvi1g1458 271 Gene3D Chlorophyll a/b binding protein domain 76 261 - -
Vvi1g1458 271 Pfam Chlorophyll A-B binding protein 75 241 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1458 Vvi-Chr1 20955000 20956954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1458 46 271 Chloroplast and Mitochondria Gene Families AT3G61470 88.053 5.82e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1458 K08908 - vvi:100266036 555.058