Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1451 ATGGCTGAAGAAGAGAAATCGGAGGCTATTATGCCCGAGTTGCCACTCGGCCGAGTCAAGAAACTGGTGAAGCTGGACAGGGACATTAACAAGGTGAACTCAGAAGCTCTCTTCCTCATCTCGTGTTCCACGGAACTCTTCCTTCGATTCCTAGCCGAGCAATCCGCAGAAATCGCGATTCAGAAGAAGCGAAGGACGGTGAAGCTCGAGCACTTGAGAATCGCGGCCAAGAAGCACCGGCCTACTAGGGATTTCCTCCTTGACTCGCTACCGGTGCCTTCCCAGCCGTCGGATCGGCCACCGGCAGATCGGATTCGTCCTCAGCCAGCCGCTGAGAAACCACTCCCGGCGGGAACTCGCCGGATCGACGATTTCTTTCGTAAGCCGGAAAAGGAAAAGCCATCTGAGGTCAACGATTCCTAG 423 0.5508 MAEEEKSEAIMPELPLGRVKKLVKLDRDINKVNSEALFLISCSTELFLRFLAEQSAEIAIQKKRRTVKLEHLRIAAKKHRPTRDFLLDSLPVPSQPSDRPPADRIRPQPAAEKPLPAGTRRIDDFFRKPEKEKPSEVNDS* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1451 140 SUPERFAMILY Histone-fold 14 89 IPR009072 GO:0046982
Vvi1g1451 140 MobiDBLite consensus disorder prediction 85 140 - -
Vvi1g1451 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Vvi1g1451 140 MobiDBLite consensus disorder prediction 117 140 - -
Vvi1g1451 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Vvi1g1451 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 5 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1451 Vvi-Chr1 20893864 20894286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1451 1 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 60.769 1.40e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vvi1g1451 CBFD_NFYB_HMF 1.2e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1451 - - vvi:100247115 276.944