Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1447 ATGTCCAGCTCAAGTCATAGGGGCATTCTCAAAACTGAAGCCCTCACAAAGTATCTATTGGAAACAAGTGCATACCCAAGAGAGCATGAGCAGCTGAAAGGCCTCAGGGAGGCCACGGTAGAAAAGCATAAGTATTGGAGCCTGATGAATGTCCCTGTCGATGAGGGACTGTTCATTTCAATGCTTCTAAAGATCATGAATGCCAAGAAGACAATCGAGCTCGGAGTGTTCACCGGTTATTCTCTCTTGGCAACAGCTCTTGCCCTGCCTCAAGATGGCAAGATAATAGCGGTTGATCCAGATAAAGAAGCGTACCAAACTGGAGTGCCATTTATCAAGAAGGCAGGTGTGGAGCATAAGATCAACTTCATTCAATCAGATGCAATGTCAGTTCTAAATGATCTCATTGCCGATGGGAAAGAAGAAGGGACATTGGACTTTGCGATGGTGGATGCTGATAAGGAGAACTACCTCAACTACCATGAGCTGCTGCTGAAGTTGGTTAGAGTTGGAGGCATAATTGCTTACGATAACACTCTATGGTTTGGTTCAGTAGCGCGATCTGAAGAAGAAGAAATGATGGATTTTGAGAGAGCAGGCAGAGTCCATCTCATGAAGTTGAACAAATTCTTGGCATCAGATCCCAGGGTTGAACTCTCTCACCTTTCCATTGGAGATGGCGTCGCGCTCTGCAGGCGCCTCTATTAG 708 0.459 MSSSSHRGILKTEALTKYLLETSAYPREHEQLKGLREATVEKHKYWSLMNVPVDEGLFISMLLKIMNAKKTIELGVFTGYSLLATALALPQDGKIIAVDPDKEAYQTGVPFIKKAGVEHKINFIQSDAMSVLNDLIADGKEEGTLDFAMVDADKENYLNYHELLLKLVRVGGIIAYDNTLWFGSVARSEEEEMMDFERAGRVHLMKLNKFLASDPRVELSHLSIGDGVALCRRLY* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1447 235 FunFam Caffeoyl-CoA O-methyltransferase 1 1 235 - -
Vvi1g1447 235 Pfam O-methyltransferase 21 234 IPR002935 GO:0008171
Vvi1g1447 235 CDD AdoMet_MTases 72 176 - -
Vvi1g1447 235 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 8 234 IPR002935 GO:0008171
Vvi1g1447 235 Gene3D Vaccinia Virus protein VP39 1 235 IPR029063 -
Vvi1g1447 235 ProSitePatterns EF-hand calcium-binding domain. 151 163 IPR018247 -
Vvi1g1447 235 PANTHER O-METHYLTRANSFERASE-RELATED 3 234 - -
Vvi1g1447 235 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 233 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1447 Vvi-Chr1 20850133 20852279 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1447 7 234 Monolignol Biosynthesis Gene Families AT1G67990 60.965 1.24e-96 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1447 K00588 K13272 vvi:100233134 461.455