Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1445 ATGTCCAGCTCAAGTCACAAGGGGATTCTCAAAACTGAAGCCCTCACAAAGTATATATTGGAAACAAGTGCATACCCAAGAGAGCATGAGCAGCTGAAAGGCCTCAGGGAGGCCACGGTAGAAAAGCATAAGTATTGGAGCCTGATGAATGTCCCTGTCGATGAGGGACAGTTCATTTCAATGCTTCTAAAGATCATGAATGCCAAGAAGACAATCGAGCTCGGAGTGTTCACCGGTTATTCTCTCTTGGCAACAGCTCTTGCCCTGCCTCAAGATGGCAAGGCAAAGCTCTCTAGAAAAGAAAATACGGTTGATCCAGATAAAGAAGCGTACCAAACTGGAGTGCCATTTATCAAGAAGGCAGGTGTGGAGCATAAGATCAACTTCATTCAATCAGATGCAATGACAGTTCTAAATGATCTCATTGCCGATGGGAACGAAGAAGGGACATTGGATTTTGCGTTTGTGGATGCTGATAAGGAGAACTACCTCAACTACCATGAGCTGCTGCTGAAGTTGGTTAGAGTTGGAGGCATAATCGCTTACGATAACACTCTATGGTTTGGTTCAGTAGCGCGATCTGAAGAAGAAGAAATGATGGATTTTGAGAGAGCAGGCAGAGTCCATCTCATGAAGTTGAACAAATTCTTGGCATCAGATCCCAGGGTTGAACTCTCTCACCTTTCCATTGGAGATGGCGTCGCGCTCTGCAGGCGCCTCTATTAG 726 0.4559 MSSSSHKGILKTEALTKYILETSAYPREHEQLKGLREATVEKHKYWSLMNVPVDEGQFISMLLKIMNAKKTIELGVFTGYSLLATALALPQDGKAKLSRKENTVDPDKEAYQTGVPFIKKAGVEHKINFIQSDAMTVLNDLIADGNEEGTLDFAFVDADKENYLNYHELLLKLVRVGGIIAYDNTLWFGSVARSEEEEMMDFERAGRVHLMKLNKFLASDPRVELSHLSIGDGVALCRRLY* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1445 241 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 8 240 IPR002935 GO:0008171
Vvi1g1445 241 Pfam O-methyltransferase 21 240 IPR002935 GO:0008171
Vvi1g1445 241 Gene3D Vaccinia Virus protein VP39 1 241 IPR029063 -
Vvi1g1445 241 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 12 239 IPR029063 -
Vvi1g1445 241 ProSitePatterns EF-hand calcium-binding domain. 157 169 IPR018247 -
Vvi1g1445 241 PANTHER O-METHYLTRANSFERASE-RELATED 3 240 - -
Vvi1g1445 241 FunFam Caffeoyl-CoA O-methyltransferase 1 1 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1445 Vvi-Chr1 20828338 20830514 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1445 7 240 Monolignol Biosynthesis Gene Families AT1G67990 58.974 1.07e-92 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1445 K00588 K13272 vvi:100250567 453.751