Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1444 ATGAACTGCCATGGACAACTCAAGGCTGTTGCTGCAATGGTGGCTGTTAATTTTGGATTATCAGTGGCGAATGTACTTATTAAGATGATCCTCGACCAAGGAGCAAACCATTTGGTTGTCATCACATACAGACAGTCTATTTCTACTGTTTTTATATCCACCATCGCCTTCTTTCTGGAAAGGAAAAGCAGGCCAAAGCTCACATTTCGGATTTTATGTCACATTTTCGCTAGTGCCTTACTCGGGGCAACTCTCACGCAATACTTCTTCCTTCTTGGCCTTAAATACACATCTGCTTCTTTTTCTTGTGCTTTCATCAACTTGGTGCCTGCAATCACATTCATACTGTCATTGGTATTCAAGCTAGAGAAAGTGAACTTAGGAGGCAAGTGTGGGAGAGCTAAGGTGTTGGGGACATTCATTTGCATTGGTGGAGCCTTATTGCTGGGGCTTTACAGAGGGATGCCATTAACAAACCCTGCATATCCCCAAGCCGAAATCCCTGGAACAAGCCATGCCAAGACCAGCATTTCATCCCACAGGACAAAGAGCTGGGCCACCGGTTCAATGGTTTTGACAGCAGCAAGTCTCACTTGGTCTTCATGGTTCCTTCTACAAGCCGGAATTAGCAAGAAGTACCCCTGCCAATATTCTAGTACCGCGATAATGTCCTTCTTCAGTGCCACCCAGGCAGCTATCTTAAGTTCAATTTTGGATAGGGACCTCTCCTTGTGGATTCTGAAAGGGAAGTTAGAGATCTCTACTGTCATCTTTGCTGGGATTGTGGGATCAGGCTTGTGCTATGTGTTAATGTCATGGTGTGTAAATAAAAAAGGCCCGGTCTTCACTGCAGCATTCACCCCTTTCATACAGATATTTGTAGCCATCTTTGATTTCTCTATCCTGCATGAACAAATCCACCTTGGAAGTGTTCTGGGATCAATCCTAGTCATAGCTGGTTTGTACATTCTTCTGTGGGGTAAAAGCAAGGAGGAAGAGGATTGTGTGATGAAGCAGTCCCAAGTAGCTGAAGAAGATCCAGAATGTGATATGGCCCCACAAGTTGTCCCAATCACTGGAACTCAATGA 1089 0.4463 MNCHGQLKAVAAMVAVNFGLSVANVLIKMILDQGANHLVVITYRQSISTVFISTIAFFLERKSRPKLTFRILCHIFASALLGATLTQYFFLLGLKYTSASFSCAFINLVPAITFILSLVFKLEKVNLGGKCGRAKVLGTFICIGGALLLGLYRGMPLTNPAYPQAEIPGTSHAKTSISSHRTKSWATGSMVLTAASLTWSSWFLLQAGISKKYPCQYSSTAIMSFFSATQAAILSSILDRDLSLWILKGKLEISTVIFAGIVGSGLCYVLMSWCVNKKGPVFTAAFTPFIQIFVAIFDFSILHEQIHLGSVLGSILVIAGLYILLWGKSKEEEDCVMKQSQVAEEDPECDMAPQVVPITGTQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1444 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 330 - -
Vvi1g1444 362 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016020|GO:0022857
Vvi1g1444 362 Pfam EamA-like transporter family 10 149 IPR000620 GO:0016020
Vvi1g1444 362 Pfam EamA-like transporter family 188 325 IPR000620 GO:0016020
Vvi1g1444 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1444 Vvi-Chr1 20822810 20824403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1444 10 333 Nodulin-like Gene Family AT1G11460 41.846 1.56e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1444 - - vvi:100245441 711.835