Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1442 ATGGCTTTCCCGTGCACTTTCATTTATCATATCTCTTATGTCTCATTCTCTGTGATTATTATTCTGAGCCTGATGAATGTCCCTGTCGATGAAGGACTGTTCATTTCAATGCTTCTAAAGATCATGAATGCCAAGAAGACAATCGAGCTTGGAGTGTTCATTGGTTATTCTCTCTTGGCAACAGCTCTTGCCCTGCCTCAAGATGGCAAGATAATAGCGATTGATCCAGATAAAGAAGCGTACCAAACTGGAGTGCCATTTATCAAGAAGGCAGGTGTGGAGCATAAGATCAACTTCATTCAATCAGATGCAATGACAGTTCTAAACGATCTCATTGCCGATGGGAAAGAAGAAGGGACATTGGACTTTGCGATGGTGGATGCTGATAAGGAGAACTACCTCAACTACCATGAGCTGCTGCTAAAGTTGGTTAGAGTTGGAGGCATAATCGCTTACGATAACACTCTATGGTTTGGTTCAGTAGCGCGATCTGAAGAAGAAGAAATGATGGATTTTGAGAGAGCAGGCAGAGTCCATATCATGAAGTTGAACAAATTCTTGGCATCAGATCCCAGGGTTGAACTCTCACACCTTTCTATTGGAGATGGCGTCGCGCTCTGCAGGCGCCTCTATTAG 636 0.4355 MAFPCTFIYHISYVSFSVIIILSLMNVPVDEGLFISMLLKIMNAKKTIELGVFIGYSLLATALALPQDGKIIAIDPDKEAYQTGVPFIKKAGVEHKINFIQSDAMTVLNDLIADGKEEGTLDFAMVDADKENYLNYHELLLKLVRVGGIIAYDNTLWFGSVARSEEEEMMDFERAGRVHIMKLNKFLASDPRVELSHLSIGDGVALCRRLY* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1442 211 Gene3D Vaccinia Virus protein VP39 20 211 IPR029063 -
Vvi1g1442 211 Pfam O-methyltransferase 21 210 IPR002935 GO:0008171
Vvi1g1442 211 CDD AdoMet_MTases 48 152 - -
Vvi1g1442 211 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 210 IPR002935 GO:0008171
Vvi1g1442 211 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Vvi1g1442 211 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 22 209 IPR029063 -
Vvi1g1442 211 PANTHER O-METHYLTRANSFERASE-RELATED 23 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1442 Vvi-Chr1 20795340 20804887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1442 23 210 Monolignol Biosynthesis Gene Families AT1G24735 62.766 1.88e-78 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1442 K00588 K13272 vvi:100233134 369.777