Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1436 ATGGTGAAGTACTCCAGAGAACCGGACAACCCCACTAAGTCTTGCAAGGCCAGGGGGTCAGATCTCAGAGTTCATTTCAAGAACACAAGGGAGACTGCTCATGCCATTAGGAAGTTGCCTTTGGCCAAGGCCAAAAGGTATTTGGAGGATGTTCTGGTCCACAAGCAAGCCATACCTTTCACCCGCTTCTGTAGAGGTGTTGGGCGAACTGCTCAGGCAAAGAACAGGCATTCGAATGGACAAGGACGCTGGCCTGTCAAATCTGCTAAATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGATTTGAAAGGTCTGGATGTTGATTCACTCTACATATCTCACATCCAAGTGAACCAGGCACAGAAACAAAGGCGCCGCACATACCGGGCTCATGGAAGAATCAACCCATATATGTCATCCCCATGCCATATCGAGTTGATTTTGTCCGAAAAGGAAGAACCTGTTAAAAAGGAGCCTGAAACTCAGTTGGCTACCAGCAAGTCCAAGAAGTCTCATGCAGTGCGCGGTGGTGCATCTTCTTGA 552 0.4764 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLVHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKSKKSHAVRGGASS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1436 183 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Vvi1g1436 183 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vvi1g1436 183 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vvi1g1436 183 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Vvi1g1436 183 MobiDBLite consensus disorder prediction 153 183 - -
Vvi1g1436 183 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vvi1g1436 183 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Vvi1g1436 183 FunFam 60S ribosomal protein L17 1 176 - -
Vvi1g1436 183 MobiDBLite consensus disorder prediction 169 183 - -
Vvi1g1436 183 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vvi1g1436 183 PANTHER 60S RIBOSOMAL PROTEIN L17 1 177 IPR005721 GO:0003735|GO:0006412|GO:0015934
Vvi1g1436 183 MobiDBLite consensus disorder prediction 153 168 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1436 1 183 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.432 2.17e-118 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1436 K02880 - vvi:100257483 358.607