Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1433 ATGGATGAGTTGGTACCAAAGAAACGATTTGAAGAAGGATCGGTAACAACGGGCAAAGATTCTTCTATTATGCGTCATGAGAATTTGGTTGCCCATCATGTAGATTCATTGCACTCATTAAAGAAGATGCATCAAGACATAGTGATCACACCGAGGCTCATCATGAACAACTACAAAACAATCGATGGGTGTAGGGTCAATGTCCACATTGCTAAGGGAGCATGCATCACTATTCATTTTGACACGACTATTATAATTCATGGTCTTCACATTCATGACTGCAAGCCCATTGTGAACGCCATGGTGAGGAGTCCACCAAGTCACTTTGTGGTAGAGGGCGGCCAGTTGGTTTCGAAAGCAAGTAAAAACAGAAAACAAGGTCGGGGAATTCAGGCAACTAGTCTGCTATGTCTAACGGTATAA 423 0.4255 MDELVPKKRFEEGSVTTGKDSSIMRHENLVAHHVDSLHSLKKMHQDIVITPRLIMNNYKTIDGCRVNVHIAKGACITIHFDTTIIIHGLHIHDCKPIVNAMVRSPPSHFVVEGGQLVSKASKNRKQGRGIQATSLLCLTV* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1433 140 Gene3D - 13 131 IPR012334 -
Vvi1g1433 140 PANTHER PECTATE LYASE 18-RELATED 45 112 IPR045032 GO:0030570
Vvi1g1433 140 SUPERFAMILY Pectin lyase-like 47 106 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1433 Vvi-Chr1 20679501 20679923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1433 45 109 Polysaccharide Lyase AT3G07010 65.672 4.39e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1433 K01728 - ming:122089450 90.5077