Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1423 ATGTTCCGATTCTTTTTTGGCAGATCTCTACAACCTAGAGGTCTTGCAGAAACATTGTGTGGTTCACCATTGTACATGGCGCCAGAGATAATGCAACTTCAGAAATATGACGCAAAGGCAGATCTCTGGAGTGTTTGTGCCATTATCTTTCAACTTGTGACTGGAAGAACACCGTTTACAAGAAACAATCATATACAGTTGCTCCAAAACATTGTTAAATATAGTGAATTGCATTTCCCTCCTGATAATAATGCTTTGAGTGCTAACTGCAAAGATTTGTGTCAGAAATTGCTGCGCCGCAATCCAGTGGAACGACTAACATTTGAAGAGTTGTTTAACCACCTATTCCTTTCTCAAAAGCAACCAGATGAAGCGTTAAGTAGGAGATCATCAAGAATAAATGATGGGTTTCCTTTTTCTGAATGCAATCCTGTGAGAAAAACAGAGGCAAGTTCTCAAGAGGATTGTATGTCTTTTCCTCTAGATGATGATTCTAGTGGTGCTGAAGGGAGCCCATCATTTTTGAGGAAGAGGTCCTCAATGAAGTCTACCTATGGATTTTCTCTTGATAACAAAGTTGATATAAGGGAAACAATATTTAACACTTCGAACAACACGGATCCTGCTTTTAAATACAACAGTACATCACATAAACCAGAAATTACTGGCTTTAGGATTGACAATCTTAGGCCTTCAAATGAGAATGTCAAAGAACCTCTAAAATCCATGGAACAAAGACCAATGAGAAGTTGTTCAAGAGTTGTGGATTCATTGGAGGAGTTGGTTGATCAAGATTATGTTTTTGTATCTGGACCCCCAATGGATGTATCATCTTCCTCAGCTATTGCTTCCAAGCCAAGTCATTCACAATGCAAATCAGGGAGTGCCCCTCTAACATCTGTAAATATGAAGACCAAATCAAGTGCACCAATGCCAATTGCTGGTGCAGGAATCACTAACACATGTTATACTGGAAGCTTGGAAAGTCATAGCTCGGCATCTTCTGGGACTTCACAAGGATCCATGGATATAGGAGATGCTTTAGAGCAACCATCAACTCACTGCATGACAAGGATTAAGTCATTGCAGCAATGTGCATCTGTCATCACTGAATTGGTAAATGAGAAGAAAACAGGGAGTTCTGGTTTTGATGGCATTTTTTGCTATGGCAGGTTCAAAAAATGGGATCAGTTGGGAGGTCAATTGATGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTAGGCAATTGAATGCATGCTTGGAGTTGAAGATGTGCTCAACGACGAGAAAGGCTCAAGTTGGAAAATGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCCTGGAAGTAAGTCTGTTCTGTTGTTTTGTGCATGCATGCACTGA 1401 0.3976 MFRFFFGRSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVCAIIFQLVTGRTPFTRNNHIQLLQNIVKYSELHFPPDNNALSANCKDLCQKLLRRNPVERLTFEELFNHLFLSQKQPDEALSRRSSRINDGFPFSECNPVRKTEASSQEDCMSFPLDDDSSGAEGSPSFLRKRSSMKSTYGFSLDNKVDIRETIFNTSNNTDPAFKYNSTSHKPEITGFRIDNLRPSNENVKEPLKSMEQRPMRSCSRVVDSLEELVDQDYVFVSGPPMDVSSSSAIASKPSHSQCKSGSAPLTSVNMKTKSSAPMPIAGAGITNTCYTGSLESHSSASSGTSQGSMDIGDALEQPSTHCMTRIKSLQQCASVITELVNEKKTGSSGFDGIFCYGRFKKWDQLGGQLMLQVLRIMKNYARQLNACLELKMCSTTRKAQVGKWCMWIMRMMYFLLGMIPGSKSVLLFCACMH* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1423 466 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1423 466 SUPERFAMILY Protein kinase-like (PK-like) 16 125 IPR011009 -
Vvi1g1423 466 SMART serkin_6 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1423 466 MobiDBLite consensus disorder prediction 151 175 - -
Vvi1g1423 466 Pfam Protein kinase domain 9 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1423 466 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 385 IPR045269 GO:0004674|GO:0006914
Vvi1g1423 466 Gene3D Transferase(Phosphotransferase) domain 1 4 158 - -
Vvi1g1423 466 MobiDBLite consensus disorder prediction 279 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1423 Vvi-Chr1 20564870 20567885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1423 6 119 CBL-interacting serine-threonine protein kinases AT1G30270 39.167 8.60e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vvi1g1423 Pkinase 8.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1423 K08269 - vvi:100266020 688.723