Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1416 ATGCCTATTCGCAAGGACGACGAGGTCCAGGTCGTTCGGGGAACCTTCAAGGGCCGAGAAGGGAAAGTCGTTCAAGTTTACTGCCAAAAACGGGTCATCCATGTCAAACGGATCTCTCACGAGAAGATTCCAATAGGTTTTCCTCACTCCAGATCAACGCCTCTTTAG 168 0.5 MPIRKDDEVQVVRGTFKGREGKVVQVYCQKRVIHVKRISHEKIPIGFPHSRSTPL* 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1416 55 Pfam KOW motif 5 30 IPR005824 -
Vvi1g1416 55 NCBIfam 50S ribosomal protein L24 1 43 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vvi1g1416 55 ProSitePatterns Ribosomal protein L24 signature. 6 23 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi1g1416 55 CDD KOW_RPL26 6 43 IPR041988 GO:0003723
Vvi1g1416 55 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 43 IPR005756 GO:0003735|GO:0006412|GO:0015934
Vvi1g1416 55 SMART kow_9 2 29 IPR005824 -
Vvi1g1416 55 Gene3D - 1 50 IPR014722 -
Vvi1g1416 55 SUPERFAMILY Translation proteins SH3-like domain 1 44 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1416 Vvi-Chr1 20463680 20463847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1416 1 43 Cytoplasmic Ribosomal Protein Gene Family AT5G67510 79.070 2.34e-19 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1416 K02898 - sspl:121804818 75.8701