Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1376 ATGCAGCTCTTCTCCCTCTCCTTCTTCCTCTTCTTCTTCCTTCTCAATCCTACTCCCTCTCTCTCACTTTCTTCTGATGGCCTCTCCTTACTCTCCCTCAAGTCCGCCGTTGACGACGCCGCCTCCGCCTTCTCCGACTGGAACGAGGACGACCCCAACCCCTGCCGCTGGACCGGCATTTCCTGCATGAATGTCTCCGGCTTCTCCGACCCCCGCGTCGTCGGAATTGCGATCTCCGGTAGGAATCTCCGTGGGTATATTCCGTCTGAATTGGGGAATCTTTTCTATCTCCGGCGGCTCAATCTTCATGGGAATAACTTTTACGGGTCAATTCCGGTTCAGTTGTTTAATGCTTCGTCTTTGCATAGTATTTTTTTGTATGGGAATAATCTCTCCGGTACTCTCCCGCCGGCGATGTGTCAGCTGCCCAGGTTGCAGAATGTCGATTTTTCCAATAATTCGCTGTCGGGATCGATTCCGGAGGGTTTGAAGAAGTGTAAACAGTTGCAGAGGTTGGTCGTCACCCGGAATCAATTTTCCGGCGAAATTCCGGAGGGGATTTGGCCGGAGATGGAGAATTTGGTTCAGCTCGATCTGTCGTCGAATGAGTTCAACGGATCGATTCCTGATGATATCGGTGAGCTGAAGTCGCTCTCCGGAACTCTGAACCTCTCTCACAACCATTTCACAGGAAAGATTCCAAAATCGCTCGGGAACCTGCCGGAGACGGTGAGTTTCGACCTCCGGAGCAACAATCTCTCCGGCGAAATCCCCCAGACCGGCGCGTTTGCCAACCAAGGCCCCACCGCATTCCTCAACAACCCCGACCTCTGCGGCTTCCCCCTCCAGAAATCCTGCCGGAACCCATCCCGGAGTTCTCCGGAGGGTCAGAGCTCATCCCCAGAATCTGGCACCAATGCAAGAAAAGGCCTGAGCCCAGGTTTGATCATCCTAATATCCGTCGCTGACGCCGCCGGAGTGGCTTTCATTGGCTTGATCATAGTGTACATATACTGGAAAAACAGGGATTCACAGGGCTGCAGCTGCACCGGCAAAGAAAAACTCGGCAGTACCGGAAGATCCGCTTTGTGTTCGTGCCTTTCTGCCCACAGTTTTCAGAATAATGACTCCGAAATGGAATCAGATAAGGAAAGAGGAGGCAAAGGAGCAGAGGGTGATCTTGTAGCCATTGACAAAGGCTTCAGTTTTGAACTGGATGAGCTTTTAAGGGCATCAGCCTACGTGTTAGGAAAGAGTGGTTTGGGGATTGTGTACAAGGTGGTGCTCGGAAATGGAGTTCCAGTGGCGGTGAGGCGGTTGGGGGAGGGTGGGGAGCAGAGGTACAAGGAATTTGTGGCTGAGGTTCAGGCTATTGGGAGAGTGAAGCACCCCAACGTTGTCAAGTTGAGAGCTTACTATTGGGCTCCTGATGAGAAGCTCCTGATTTCGGATTTCATCTCCAATGGCAACTTGGCTAATGCTCTCCGAGGGAGAAGTGGACAGCCATCATCGAGCCTCTCATGGTCAACCAGGCTGAAAATTGCCAAGGGAACAGCCCGGGGCTTGGCCTACCTGCATGAATGCAGTCCAAGAAAGTTTGTCCATGGAGACATAAAACCCTCCAACATCCTCCTTGACAACGAATTCCAGCCCTATATCTCTGATTTTGGCCTCAACAGACTAATTACAATCACAGGCAACAACCCTGCCTCATCCGGTGGCTTCATTGGTGGAGCCCTCCCCTATCTAAAATCAGTCCAACCAGAACGACCCAACAATTACAAAGCCCCAGAGGCTCGGGTTGCCAACAGCCGCCCTACACAAAAATGGGATGTCTACTCATTTGGGGTTGTATTACTTGAACTGCTGACCGGAAAATCCCCAGAGCTCTCCTCTCCAACCACATCAACATCCACAGAAGTCCCAGATCTAGTGAAGTGGGTGAGGAAAGGATTTGAAGAGGAGAATCCCCTTTCAGATATGGTAGACCCCTTGTTGCTCCAAGAAGTGCAAGCCAAGAAGGAGGTGCTAGCAGTGTTTCATGTGGCCCTTGCCTGCACTGAGGGAGACCCAGAACTTCGGCCTAGGATGAAGACTCTCTCAGAAAACCTAGAAAGAATTGGATCATAA 2130 0.515 MQLFSLSFFLFFFLLNPTPSLSLSSDGLSLLSLKSAVDDAASAFSDWNEDDPNPCRWTGISCMNVSGFSDPRVVGIAISGRNLRGYIPSELGNLFYLRRLNLHGNNFYGSIPVQLFNASSLHSIFLYGNNLSGTLPPAMCQLPRLQNVDFSNNSLSGSIPEGLKKCKQLQRLVVTRNQFSGEIPEGIWPEMENLVQLDLSSNEFNGSIPDDIGELKSLSGTLNLSHNHFTGKIPKSLGNLPETVSFDLRSNNLSGEIPQTGAFANQGPTAFLNNPDLCGFPLQKSCRNPSRSSPEGQSSSPESGTNARKGLSPGLIILISVADAAGVAFIGLIIVYIYWKNRDSQGCSCTGKEKLGSTGRSALCSCLSAHSFQNNDSEMESDKERGGKGAEGDLVAIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFVAEVQAIGRVKHPNVVKLRAYYWAPDEKLLISDFISNGNLANALRGRSGQPSSSLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNEFQPYISDFGLNRLITITGNNPASSGGFIGGALPYLKSVQPERPNNYKAPEARVANSRPTQKWDVYSFGVVLLELLTGKSPELSSPTTSTSTEVPDLVKWVRKGFEEENPLSDMVDPLLLQEVQAKKEVLAVFHVALACTEGDPELRPRMKTLSENLERIGS* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1376 709 MobiDBLite consensus disorder prediction 284 307 - -
Vvi1g1376 709 SUPERFAMILY L domain-like 24 283 - -
Vvi1g1376 709 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Vvi1g1376 709 FunFam Os07g0541700 protein 494 573 - -
Vvi1g1376 709 Gene3D Transferase(Phosphotransferase) domain 1 486 709 - -
Vvi1g1376 709 Gene3D Phosphorylase Kinase; domain 1 394 485 - -
Vvi1g1376 709 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Vvi1g1376 709 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Vvi1g1376 709 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 142 707 IPR046959 -
Vvi1g1376 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Vvi1g1376 709 Pfam Protein kinase domain 415 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1376 709 Gene3D Ribonuclease Inhibitor 188 288 IPR032675 -
Vvi1g1376 709 CDD STKc_IRAK 416 707 - -
Vvi1g1376 709 Pfam Leucine Rich Repeat 221 240 IPR001611 GO:0005515
Vvi1g1376 709 SUPERFAMILY Protein kinase-like (PK-like) 415 704 IPR011009 -
Vvi1g1376 709 MobiDBLite consensus disorder prediction 285 307 - -
Vvi1g1376 709 ProSiteProfiles Protein kinase domain profile. 410 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1376 709 FunFam Leucine-rich repeat receptor-like protein kinase 193 288 - -
Vvi1g1376 709 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 189 - -
Vvi1g1376 709 SMART serkin_6 414 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1376 Vvi-Chr1 19953835 19957398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1376 16 707 Receptor kinase-like Gene Family AT1G67510 71.146 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi1g1376 Pkinase 1.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1376 - - vvi:100263011 1352.42