Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1374 ATGGATATTCATGAGGTTGAAGAGAGTTTGTTCGCGGTCAGTGATGCCAAGTTACATGGAGGGATGTGCAGGATGCTCTCCACGATTTATTGCAAAATACTGGAAATTTTCCCTGTTCTGGAAGCAGCAAGGCCTAGGAGCAAATCAGGTATTCAGGCATTATGCTCATTGCACATAGCGCTGGAGAAGGCCAAGAATATTCTTCAGCATTGCTCAGAATGTAGTAAACTTTATTTGGCTATTACTGGTGATTCAGTGGCTTTAAAATTCGAGAAGGCACGATGTGCTCTTGCAGATAGTCTGAGGCGAGTTGAAGATATTGTTCCACAAACTATTGGTGTCCAGATTTCTGAGATAGTAAGTGAACTTGAGGGAACTGCATTCGCACTTGATCCATTGGAGAAGCAAGTTGGTGATGATATAATTGCATTGCTCCAGCAGGGCAGAAAATTCAACAACAGCAATGACAATAATGAGCTCGAGTCTTTTCACCAAGCTGCTTCTAGACTTGGTATCACCTCTTCAAGAGCAGCCCTTACAGAGAGAAGAGCTCTTAAGAAGCTCATAGAAAGAGCTCGTATTGAGGAAGACAAGCGGAAAGAATCAATTGTTGCTTATCTTTTACATCTCATGAGAAAATACTCTAAGTTATTTAGAAGTGAGTTATCAGATGACAATGATTCACAGGGTTCGGCTCCTTGTTCGCCGACTGTTATGGGTTCTCTTGAAGATGGTGTTGGACCTGCAGTCTATGGTCATGCCTTTGAGAGACAGCTCTCAAAACTTGGTTCTTTCAATTTCAAGCCAAATAATAGGAGATCTGGGCAGATGCCTCTTCCACAAGAAGAGTTGAGGTGTCCAATATCATTGCAGCTCATGTATGATCCAGTGATAATATCTTCTGGGCAAACGTATGAAAGAATCTGCATTGAGAAATGGTTCAGTGATGGGCACAACACTTGCCCGAAAACTCAACAGCAGCTATCTCATCTTTGTCTAACTCCTAATTACTGTGTTAAGGGTCTCATTGCGAGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTGATGGCCCTCCAGAGTCTCTTGATCTCAACTACTGGAGGCTCGCTTTGTCTGAGTGTGAGTCAACAAATTCGAAATCAATGGACAGCATTGGTTCCTGCAAGATGAAGGGGGTAAAGGTGGTTCCTTTAGAGGAGAGTGGCATAATTGAGGAGGTCGAGGGAAATGAAATGGAAAATGTGCATGAACAGGATGAAGAGTCTGAAAACGTGTTTGAAAGATATGAGAACTTTCTGGCTATCTTGGATGGAGAGGAAGACTTGAGGAAAAAGTGCAAGGTGGCAGAACAGATCAGACACTTGCTAAAGGACGATGAGGAAGCCAGGAATTTTATGGGAGCTAATGGGTTTGTTGAAGCATTGATGCGCTTTTTAGAGTTGGCTGTGCGAGGAAGGAATGAAATGGCTCAGGAAATTGGGGCTATGGCTCTGTTCAATCTTGCTGTTAACAATAACAGAAACAAGGAACTGATGTTGGCATCGGGAGTACTCCCATTGCTTGAGGAAATGATCCCCAATTCCAACTCCCATGGATCAGCTACAGCCCTCTACCTGAACCTTTCTTGTCTTGAAGAAGCCAAGCCCATGATTAGCACAAGCCAAGCTGTCCCCTTTTTAATCCATCTGCTTGGAGCTAAAACTGAACCGCAATGCAAGCTTGATGCCCTCCATGCCCTCTATAATCTCTCCACCCATCCTGCCAATATCCCCAACCTACTTGCAGCTGGCATTATCAGCGGCCTCCATTCCCTTCTCACAGACCCGGCTGACAACACATGGACAGAAAAAACCTTGGCTGTCTTTGTAAACTTGGCTTCAAATAAATTAGGAAAAGATGAAATCATGGTAGCCCCTGGCCTTATTAGTGGGTTGGCAACGATACTGGATGTTGGTGAGGCCATTGAGCAGGAGCAAGCTGTTGTCTGTCTTCTGATCTTATGTAATGGGAGTGAGAAATGCAGTCAGATGGTCCTCCAAGAAGGGGTGATACCTGCATTGGTTTCCATATCAGTGAATGGGACCGTGAGAGGGAAAGAAAAGGCTCAGAAACTTCTGATGCTGTTTCGGGAGCAGCGGCAGCGAGACCCATCACCTGTTGGGAGTCCTCATCATACTGAAAGCAGTACCGAGGCTGTGCCTGGTCCTGAATCAAAGCCATTGGAATCAAAAGCGCTGGAAACAAAGCCATTGGAATCCAAGCCATATTGTAAATCGATCTCAAGAAGAAAAGTGGGAAAGGCTTGGAATTACTTGTGGAAGAGCAAGAACTATTCGGTTTACCAGTGTTGA 2352 0.446 MDIHEVEESLFAVSDAKLHGGMCRMLSTIYCKILEIFPVLEAARPRSKSGIQALCSLHIALEKAKNILQHCSECSKLYLAITGDSVALKFEKARCALADSLRRVEDIVPQTIGVQISEIVSELEGTAFALDPLEKQVGDDIIALLQQGRKFNNSNDNNELESFHQAASRLGITSSRAALTERRALKKLIERARIEEDKRKESIVAYLLHLMRKYSKLFRSELSDDNDSQGSAPCSPTVMGSLEDGVGPAVYGHAFERQLSKLGSFNFKPNNRRSGQMPLPQEELRCPISLQLMYDPVIISSGQTYERICIEKWFSDGHNTCPKTQQQLSHLCLTPNYCVKGLIASWCEQNGVPVPDGPPESLDLNYWRLALSECESTNSKSMDSIGSCKMKGVKVVPLEESGIIEEVEGNEMENVHEQDEESENVFERYENFLAILDGEEDLRKKCKVAEQIRHLLKDDEEARNFMGANGFVEALMRFLELAVRGRNEMAQEIGAMALFNLAVNNNRNKELMLASGVLPLLEEMIPNSNSHGSATALYLNLSCLEEAKPMISTSQAVPFLIHLLGAKTEPQCKLDALHALYNLSTHPANIPNLLAAGIISGLHSLLTDPADNTWTEKTLAVFVNLASNKLGKDEIMVAPGLISGLATILDVGEAIEQEQAVVCLLILCNGSEKCSQMVLQEGVIPALVSISVNGTVRGKEKAQKLLMLFREQRQRDPSPVGSPHHTESSTEAVPGPESKPLESKALETKPLESKPYCKSISRRKVGKAWNYLWKSKNYSVYQC* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1374 783 PANTHER U BOX DOMAIN-CONTAINING 27 711 - -
Vvi1g1374 783 CDD RING-Ubox_PUB 282 333 IPR045210 -
Vvi1g1374 783 SUPERFAMILY ARM repeat 431 701 IPR016024 -
Vvi1g1374 783 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vvi1g1374 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Vvi1g1374 783 Pfam U-box domain 282 350 IPR003613 GO:0004842|GO:0016567
Vvi1g1374 783 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Vvi1g1374 783 Gene3D - 404 717 IPR011989 -
Vvi1g1374 783 FunFam RING-type E3 ubiquitin transferase 399 719 - -
Vvi1g1374 783 MobiDBLite consensus disorder prediction 719 733 - -
Vvi1g1374 783 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Vvi1g1374 783 SMART arm_5 544 585 IPR000225 GO:0005515
Vvi1g1374 783 SMART arm_5 459 503 IPR000225 GO:0005515
Vvi1g1374 783 SMART arm_5 505 543 IPR000225 GO:0005515
Vvi1g1374 783 SMART arm_5 586 627 IPR000225 GO:0005515
Vvi1g1374 783 SUPERFAMILY RING/U-box 280 356 - -
Vvi1g1374 783 MobiDBLite consensus disorder prediction 713 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1374 Vvi-Chr1 19925624 19929463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1374 1 782 U-box Gene Family AT1G24330 68.274 0.0 1064
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1374 - - vvi:100256374 1555.81