Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1369 ATGACTTCAATGGCATCATTGCTATCAACATATACGACTTTTGCTGCAGCAGCCATGCTGCTTCGAACTGTTCTTAATGAAGCTCGGAGCCTGATCAACCAGTTCATACCCCAATATGTGCAGGAGAGAATCTGGTCCAAAATTGGAGGGATTTTTGGAAATCGCCACTCTTCTTCTCACATGACTCTTATCATGGATGAATGCGACAATTACATCACTAATCAATTCTACGAGGCTTCTGAAATCTACCTGCGCGCAAAAGTTAGTCCCTCAGTTACGAAGCTCAAGGTTTTTCAAGCTCCGGATGACAAGAACCCGTCAGTCACCATCAAGAATGGCGAAAAGTTTACTGAGGTCTTCCAGGGAATCCAACTCCAGTGGGAAAGCTTTTGTATAGAAAAGAATAGGAATGAATACTACGACAGGGGTGGAGAAATTAAGTCAATTGAGCTGAGTTTCCCTCGGAAAAACATGGACAAGATATTGAGTTCTTACCTGCCGTATGTGTTGGAGAGATCAAAAGCCATTAGAAAAGAAAACAGGGTGCTGAAGCTCCATTCGTATAACGGGTCATGGGAATCAACCAACTTGGATCATCCATCGACTTTTGAAACGTTGGCAATGGATTCAAAGCTCAAGGAGGACTTGATAAATGACCTGGACAGATTTGTGAGGAGAAGCCAGTTTTACAGAAGAGTTGGCAAGGCATGGAAACGAGGGTATTTGTTGTATGGCCCTCCGGGTACTGGAAAGTCGAGCTTGATTGCAGCCATGGCAAACTATCTGAAATTTGACATCTATGACTTAGAACTCACAAGTCTGCACAGCAATTATGAACTTAGAAGACTGTTAGTCTCTACCAAGAACCAATCCATACTTGTGATTGAAGATATTGACTGCAGCGTTGCGTTGCAGGACCGACGATCTGGAGGATGCGGCCAAGGCAACAGCCAGTTGACATTATCTGGGTTCCTTAATTTCATTGATGGGTTGTGGTCAAGCTGCGGTAATGAGAGAATAATCGTGTTCACAACTAATCATAAGGACAAGCTAGACCCCGCATTGTTGAGACCAGGCCGCATGGATGTGCACATCCACATGTCCTTCTGCAATCCTTGTGGATTTAAGACCCTTGCTTCCAACTACCTAGACGTCAGCAATCACAAACTGTTCCCTGAGATCGAAAAGCTGCTAATGGAGGTGGAGGTGACCCCAGCAGAGATTGCAGAAGAGTTCATGAAAAGTGAGGATGCTGATGTTGCCCTTGAAGGACTAGTTGAGTTCCTCAGGAGGGTAAAGATGATACGAAATGGATCAGATGGCAGAGACGGAAAAGAAGTTTATGAACATTGA 1353 0.4435 MTSMASLLSTYTTFAAAAMLLRTVLNEARSLINQFIPQYVQERIWSKIGGIFGNRHSSSHMTLIMDECDNYITNQFYEASEIYLRAKVSPSVTKLKVFQAPDDKNPSVTIKNGEKFTEVFQGIQLQWESFCIEKNRNEYYDRGGEIKSIELSFPRKNMDKILSSYLPYVLERSKAIRKENRVLKLHSYNGSWESTNLDHPSTFETLAMDSKLKEDLINDLDRFVRRSQFYRRVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTSLHSNYELRRLLVSTKNQSILVIEDIDCSVALQDRRSGGCGQGNSQLTLSGFLNFIDGLWSSCGNERIIVFTTNHKDKLDPALLRPGRMDVHIHMSFCNPCGFKTLASNYLDVSNHKLFPEIEKLLMEVEVTPAEIAEEFMKSEDADVALEGLVEFLRRVKMIRNGSDGRDGKEVYEH* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1369 450 Gene3D - 366 436 - -
Vvi1g1369 450 PANTHER BCS1 AAA-TYPE ATPASE 10 433 - -
Vvi1g1369 450 Pfam ATPase family associated with various cellular activities (AAA) 242 367 IPR003959 GO:0005524|GO:0016887
Vvi1g1369 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 420 IPR027417 -
Vvi1g1369 450 CDD RecA-like_BCS1 216 367 - -
Vvi1g1369 450 Pfam Domain associated at C-terminal with AAA 36 130 IPR025753 -
Vvi1g1369 450 ProSitePatterns AAA-protein family signature. 339 357 IPR003960 GO:0005524|GO:0016887
Vvi1g1369 450 SMART AAA_5 237 371 IPR003593 GO:0016887
Vvi1g1369 450 Gene3D - 193 365 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1369 Vvi-Chr1 19877398 19878856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1369 239 367 Calmodulin-binding Proteins AT3G56690 31.387 7.03e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1369 - K08900 vvi:100259595 904.82