Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1359 ATGGCCGACCTAAACCCTAACCATTCTTCTTCTATTTATCCAAATACCGGCTTCTGCTCCAAAACCATGATCTACCACAGCCTCCGCCCCCACCCTCCCCTCCCCCCGGAAACCGCTCCTCTCTCCCTCTCCGACTACGTTTTTTCCCACCTTTCTACCTCCTCCGCGCCAGAAACCGCCGTCGCCTTCATCGACGCCACCACCGGCCGCAGCATTTCCTTTTCACAGCTTGTCCGCTTCTCCGAAACCCTAGCCGCCTCGCTCCAACGCCGGCTTGGCCTCACCAGAGGCGACTCTGCCTTGGTCATCTCCCCAAATTCGCTTCATGTGCCGGTTCTCTACTTCGCTCTCTTCTCCCTCGGCGTCATCGTCTCTCCTTCGAATCCGGCGAGTACTGAGTCCGAGATTTCCCGCCAAATCGAGCTATGCAAGCCGGTCATTGCCTTCGCGACTTCTTCTACCGCTCACAAGGTTCCATCCCTGAAATTCTCGACCGTGGTTCTCGACTCGCCGGAGTTTCACTCGATGATGACAGTTGAGACTGGGAATCTCCGCCGAGTTCGCGTTTCGCAGTCCGATCCTGCAATGATTCTTTACTCTTCGGGGACAACGGGGCGGGTGAAGGGCGTGGTTCTGACTCACCGGAACTGGATATCCGCGGTGGCGGGAGCGAATGTGCTTCGACAAGAGAGGGCGTCGCCGACGGTGACGATGTGTACGGTACCTTACTTTCATGTGTACGGATGTGGACTTTGTATGAGGGCGGTGGCGTTAGGGCAGAGCGTGGTAGCGATAGAGAGATTGAATGTGCGGTCGTTGATGTCGGCTGTTCAGGAGTTTAGGGTTACGCACTTGGCTGTGGCGCCGCCGGTGATTGTGATGATGGCAAACGGCGGCGATTTAGTGGACGGTTGTGATTTGAGGTCATTGGAAGCGGTGCTCTGTGGCGGAGCTCCGGTTAGTACGGCGGTGATCGAGAGGTTCAAGAAGCGGTTTCCGAACGTGCTGGTGACGCAGGCCTATGGGTTGACTGAAACAACAGGGGGAATCTCTAGAACAGTAGGTCTGGAAGAAAGCCAAAGACTAGGCGCATCAGGGCGTCTTATCCCATATTGCCAAGCTAAGATTGTTGATCCTGATACTGGCATTGCATTGCCTCCCTTGAGGACAGGGGAGCTTTGGGTTAGAGGTCCATCCATTATGAAGGGTTATGTTGGCAATGAAGAAGCAACAGCTGAAATTCTGGATTCTGAGGGATGGTTAAGAACAGGAGATATTTGTCATTTTGACAGAGACGGCTTCATATATGTTGTGGATAGGATTAAGGAATTGATCAAATACAAAGGCTACCAGGTTGCCCCTGCAGAGTTGGAACATCTGCTTCACTCGCATCCGGATACTGTAGAAGCAGCTGTGATTCCGTACCCTGATGCGCAAGCTGGTCAAGTACCCATGGCATTTGTGGTGAAGCGCCCCCAAAGCACCATTGATGAATCAGAAATCATGGATTTCATTGCCAAACAGGTGGCCCCATACAAGAAAATTAGACGGGTATCCTTCATTAATTCAATTCCGAAGAATGCTACTGGTAAGGTGTTGAGAAAGGACTTAATCAAGCTTGCATCATCAAGAAGTGGCTGTTCCAAGTTATGA 1653 0.5239 MADLNPNHSSSIYPNTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLSTSSAPETAVAFIDATTGRSISFSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTESEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLDSPEFHSMMTVETGNLRRVRVSQSDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASPTVTMCTVPYFHVYGCGLCMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCDLRSLEAVLCGGAPVSTAVIERFKKRFPNVLVTQAYGLTETTGGISRTVGLEESQRLGASGRLIPYCQAKIVDPDTGIALPPLRTGELWVRGPSIMKGYVGNEEATAEILDSEGWLRTGDICHFDRDGFIYVVDRIKELIKYKGYQVAPAELEHLLHSHPDTVEAAVIPYPDAQAGQVPMAFVVKRPQSTIDESEIMDFIAKQVAPYKKIRRVSFINSIPKNATGKVLRKDLIKLASSRSGCSKL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1359 550 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Vvi1g1359 550 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Vvi1g1359 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 18 539 - -
Vvi1g1359 550 Pfam AMP-binding enzyme 59 447 IPR000873 -
Vvi1g1359 550 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Vvi1g1359 550 Gene3D - 443 545 IPR045851 -
Vvi1g1359 550 CDD 4CL 35 537 - -
Vvi1g1359 550 Gene3D - 24 442 IPR042099 -
Vvi1g1359 550 SUPERFAMILY Acetyl-CoA synthetase-like 27 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1359 Vvi-Chr1 19768992 19771314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1359 7 541 Monolignol Biosynthesis Gene Families AT5G63380 50.000 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1359 - - vvi:100266547 1071.23