Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1346 ATGATAGGATTCGATCGGGTCCTTGTCCATCGTCTCCAGTCTTGCAAAGACAACTACCAAACCCTAGACGCCATCATCAACCATCTCTGCAGGAAATACCCGGAGTACAGTCGCAAGAAGCGCCAGCCTTTCACCAGACTCGTCCAACAAGCCCTAGAGTCATTGCAGCAACCCCACCGCAGCACCAAGAAAAAGAAGAACGAACCCTTGACCTCAAATCTCGATGATGACAACCAAGAGTTCAGTGACAGCGCCCGCACTCGTAAGAGGCCCAAGAAGATTAATGAGAGCGAAGAGAGATTGGTCCGTCGGGAATTGGAGCACTACCGGAGGATGCAGAGGGATCAGGAACGTCCATCCACGTCTTCGGATTCGGACTCGGATTCGGATTCGAATTCGAGTTCGAGTTCCAGTTGTGATAGCGAAGATGGCGCGGTGTCGACGTCCGAAAATGCAGATGCCATCTATGAGGAGAAGGTGGAGCCGGAGTGTGATTTGATGAAGGAGATGATGCGAGCGACGTACGCCAAGTCGGCTTCGAAAAATGTGGAGTCCAAAAATGAAAATCCGAGACTGATTGAAGACAAGAATATCGAATTGGAGGTCGGTGATAAGCAGAAGAGTAAGATTGGTATGGTAGAAGGAGGTGGAGTTGGGAAGGGATTGGGGAAGGGCTCGAAGAAAGAAGTGAAGGGTTCTGTTTCGACCGGTGTTGAGGTGAGTGGAAAGGATGGACCGATGTTTAGTGACCTTGGAGGGATGAAAAGCGTGGTGGAGGACTTGAAGATGGAAGTGATTGTTCCGCTGTATTATCCAGAATTGCCTCGTTGGTTGGGAGTACGCCCAATGGCGGGAATTTTGTTGCACGGGCCGCCTGGTTGTGGAAAGACCAAGTTGGCTCATGCCATTGCTAATGAGACTAAAGTTCCATTTTACAAGATATCAGCGACTGAGGTGGTCTCTGGTGTATCAGGTGCATCAGAAGAGAATATTAGGGAGCTTTTCTCAAAAGCATACAGGACCGCACCATCAATTGTTTTCATTGATGAAATTGATGCAATTGCCTCAAAAAGAGAAAACCTAAATAGGGAGATGGAGCGACGGATTGTGACACAGTTGATGACTTGCATGGATGAATCCAACAGACTTGTACAACCTGCTGATGGAGATAAAGAATCAGAAATCTCTCATCACAAACCTGGTTATGTACTTGTTATAGGAGCCACTAATAGGCCTGATGCTGTTGACCCTGCACTAAGGAGGCCAGGGCGTTTTGATCGTGAGATTGCTTTAGGTGTTCCGGATGAAAGTGCTAGGGCTGATATTCTTTCAGTAATTACACGCAATCTTAGACTTGAGGGTTCTTTCGATCTTGCAAAATTAGCTAGGTCCACACCAGGGTTTGTTGGAGCTGATTTGGCAGCACTGGCCAACAAGGCTGGTAACCTTGCCATGAAGAGAATTATAGACAGAAGAAAGTTTGAGCTGTCTAGAGAACTAACAGATGAAGAACATATTGAAGATTGGTGGAGGCAGCCATGGTTGCCTGAAGAGATGGAAAAACTTAGCATTACAATGGCAGATTTTGAGGAAGCAGCTAAAATGGTTCAGCCCTCTTCTAGAAGAGAAGGATTCTCTACCATTCCAAATGTAAGGTGGGAAGATGTTGGAGGGCTTGATTTTTTAAGGCAGGAATTTGACCGTTACATAGTTAGGCGTATTAAATACCCTGAGGATTATGAGGAATTTGGTGTGGATTTAGAGACAGGATTTTTGCTTTATGGGCCTCCTGGCTGTGGTAAAACACTAATTGCCAAGGCTGTTGCAAATGAAGCAGGGGCCAATTTCATACATATTAAGGGCCCTGAACTTCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTAGGACGCTATTTAGTCGAGCAAGGACATGTTCTCCATGCATACTATTTTTTGATGAGGTGGATGCTTTGACAACAAAGCGTGGGAAGGAAGGGGGATGGGTTGTTGAGCGGCTTCTAAACCAGCTATTGATAGAGTTAGATGGTGCAGATCAGCGGCGGGGTGTTTTTGTTATTGGTGCCACAAATAGACCTGAGGTGATGGACCGTGCCGTGTTACGGCCTGGTAGGTTTGGGAAACTTCTTTATGTACCTTTGCCTAGTCCGGATGAGCGTGGGTTGATCCTAAAAGCTCTTGCTAGGAAGAAGCCTATAGATGCCAGTGTGGATTTGATTGCCATAGGACAGAAAGAGGCTTGTAACAATCTAAGTGGGGCTGATCTTTCTGCACTGATGAATGAAGCAGCCATGGCTGCTCTGGAAGAGAAACTCGCAGATTGCAGTTCAGGTGCAATTTCATGGACTATAAATGCAAAACATTTTGACCAAGCACTTGGGAAAATCTCTCCATCTGTCTCAAACAAGCAAAAACACTTCTACCAGGTTTTGTCAGAAAGCTTCAAAGCAGAATGA 2478 0.4609 MIGFDRVLVHRLQSCKDNYQTLDAIINHLCRKYPEYSRKKRQPFTRLVQQALESLQQPHRSTKKKKNEPLTSNLDDDNQEFSDSARTRKRPKKINESEERLVRRELEHYRRMQRDQERPSTSSDSDSDSDSNSSSSSSCDSEDGAVSTSENADAIYEEKVEPECDLMKEMMRATYAKSASKNVESKNENPRLIEDKNIELEVGDKQKSKIGMVEGGGVGKGLGKGSKKEVKGSVSTGVEVSGKDGPMFSDLGGMKSVVEDLKMEVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLAHAIANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLNREMERRIVTQLMTCMDESNRLVQPADGDKESEISHHKPGYVLVIGATNRPDAVDPALRRPGRFDREIALGVPDESARADILSVITRNLRLEGSFDLAKLARSTPGFVGADLAALANKAGNLAMKRIIDRRKFELSRELTDEEHIEDWWRQPWLPEEMEKLSITMADFEEAAKMVQPSSRREGFSTIPNVRWEDVGGLDFLRQEFDRYIVRRIKYPEDYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVPLPSPDERGLILKALARKKPIDASVDLIAIGQKEACNNLSGADLSALMNEAAMAALEEKLADCSSGAISWTINAKHFDQALGKISPSVSNKQKHFYQVLSESFKAE* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1346 825 MobiDBLite consensus disorder prediction 58 124 - -
Vvi1g1346 825 FunFam Cell division control protein 48 homolog C 434 543 - -
Vvi1g1346 825 Pfam ATPase family associated with various cellular activities (AAA) 286 431 IPR003959 GO:0005524|GO:0016887
Vvi1g1346 825 Pfam ATPase family associated with various cellular activities (AAA) 592 720 IPR003959 GO:0005524|GO:0016887
Vvi1g1346 825 Gene3D - 722 801 - -
Vvi1g1346 825 FunFam - 2 62 - -
Vvi1g1346 825 MobiDBLite consensus disorder prediction 211 238 - -
Vvi1g1346 825 MobiDBLite consensus disorder prediction 125 148 - -
Vvi1g1346 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 549 822 IPR027417 -
Vvi1g1346 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 542 IPR027417 -
Vvi1g1346 825 MobiDBLite consensus disorder prediction 53 158 - -
Vvi1g1346 825 Gene3D - 434 543 - -
Vvi1g1346 825 Pfam AAA+ lid domain 744 780 IPR041569 -
Vvi1g1346 825 Pfam AAA+ lid domain 456 490 IPR041569 -
Vvi1g1346 825 ProSitePatterns AAA-protein family signature. 403 421 IPR003960 GO:0005524|GO:0016887
Vvi1g1346 825 Pfam Nucleolin binding domain 5 57 IPR031996 -
Vvi1g1346 825 FunFam Ribosome biogenesis ATPase RIX7 237 432 - -
Vvi1g1346 825 ProSitePatterns AAA-protein family signature. 691 709 IPR003960 GO:0005524|GO:0016887
Vvi1g1346 825 FunFam ATPase, AAA family protein 549 727 - -
Vvi1g1346 825 PANTHER AAA-FAMILY ATPASE 74 823 - -
Vvi1g1346 825 Gene3D - 549 815 IPR027417 -
Vvi1g1346 825 Gene3D - 240 432 IPR027417 -
Vvi1g1346 825 SMART AAA_5 587 723 IPR003593 GO:0016887
Vvi1g1346 825 SMART AAA_5 282 435 IPR003593 GO:0016887
Vvi1g1346 825 Gene3D - 2 62 IPR038100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1346 Vvi-Chr1 19653128 19663329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1346 522 823 Calmodulin-binding Proteins AT3G56690 43.750 2.02e-68 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1346 K14571 - vvi:100261441 1523.84