Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1345 ATGGAAACCGATTCCGATTCTGACTCCGACGCCTCTCACGTTTCCGCCACTCCACCAAGAGACCGCAGTCCACCACCTCCACAGCAAGCGCCACAGCCACCGCCACCGCCGCCGCCGCCGCCGCCGCCACTCTCCATTCTTCTCTCTTCAATCAAATCCAGAACTAAGGCTAGACCCTCCTCCACTGCAAAACCCAAACCATCTTCCAAGTCTACAAAACCCTGCTTAAACTCTAATTCTAATCCTAACCATAACCATAACCCTAACCCTGACTCCATCCCCCCTCATCACCATCCTTTTTCCTTACCTAACCTTCGTTTTTCCGGTCAAAACCATCCCATTTATGCAGTCAATTCGTTTGAAACCCTTCCCGCCGGCTACTTCTCCAAGGTCGCGTCCTTTTCTAAACTCCAAAAACCTTGCCCCAAACCAGATCCGGTGGAAAATGAGCCGTCTTTAGCTTCTGGGTTGACTCCGAAACAACCCCACGCTTGTGAGGCTGTTAGTACCGGGAGTGCAGTGAAATTTGTGAAGAAACATTGTAATTTGATCGGTTCTGATGTTAATCCCAAACCGGTGAAGCGGCCTAAGTGCGGTAGTGAAGGAAATTTTGTGAGGCTGAACATCAATGGCTATGGGCGAAAGTTTACAAACAAGGGCAAGAGAAAGAGTTACAATGCATCGAGTGGGGCTCGGCGAACATTTAGGAGAACTAAAAGAAAATCGAAAGCAGAAGGTGGAGCTGAAGAGGATGAAGATGGCTTGGTTTTGGAGACCCCCACAATGGAGAAGCAAGGGAGAGTAAAATTTGACGGTGAGTTGATTGAGGCGGCTGCGTTGGAGGTTCAGAATGAGGCGTCTGATGAGAAATTGGTGAAGTTGCTGGGGCTGACACATGGTTATGATTCGTTCCGGGATGGACAGTTGGAGGCAATTAGGATGGTGCTCGAGGGGAAATCAACAATGCTGGTTTTGCCAACGGGTGCTGGAAAATCACTGTGTTATCAGTTACCAGCACTGGTGTTACCAGGGATCACGCTGGTTGTGAGTCCGCTGGTAGCTTTGATGATTGATCAACTTAAACAGCTGCCTCCAATGATTCCGGGTGGTCTTTTGTCTAGCAGTCAGTCAGCTGAAGAGACTTCTGAAACACTACGACAGCTTCGAGAAGGAACTATCAAGGTTCTTTTTGTTTCACCTGAGAGGTTTCTAAATGCAGAGTTTTTGTCGATAGTTTCAGCCGGTCCACCTATATCACTTGTAGTGGTGGATGAAGCTCACTGTGTGTCTGAGTGGTCACATAATTTTCGGCCTTCATATATGAGGCTGAGGGCATCCTTACTTCATGCTGTGCTTAATGCTAAATGCATTCTTGCAATGACTGCAACTGCAACGAGCAGAACCCTGCATGCTGTTATGCATGCTCTGGAAATTCCAGCAGCCAATCTCATCCAGAAAGCCCAATTAAGGGACAATTTACAGCTATCGGTATCTCTAAGTAAAAATAGGATGAAAGATTTGATGATGCTAATCAAGTCTCCTCCCTTTATTGAGGTTCAGAGTATCATTATTTACTGCAAATTTCAGTCTGAGACTGATTCAATAAGCAAATACTTATGTGATAACAATATCTCTGCAAAGAGTTACCACAGTGGCATACCAGCAAAGGACCGAAGTCGTACACAGGAGTTGTTTTGTTCCAACAAGATAAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGCCTCAATAAGAGTGATGTTGGAGCTGTTATACATTTCAGCTTACCAGAAAGCTTGGAGGAGTATGTTCAGGAGATTGGACGGGCTGGACGAGATGGGAATTTGTCTTATTGTCATCTTCTCTTTGATGATATTACATATTTCAAGCTTCGCAGTCTGATGCACAGTGATGGAGTGGATGAATATGCGGTAAATAGATTTCTATCCCAGGTTTTCAGCAATGGCATGGGCTCACCTGGGAAAGTTCATTCGATAGTCAAAGAAGCTGCATCTCGTAAATTTGATATGAAAGAAGAGGTGATGCTTACAATCTTAACGCACTTGGAGTTGGGTGAAGTACAATACTTGTCTTTACTTCCGCCATTAAATGTAACTTGCAGCTTAAACTTCCATAAGACTACCCCTGCTTTGCTTGCTGACTGGGATATTGTGGTTGCAGCAATTCTAAAGAAGTCTGAAACTAAACAAGGGCACTATGTGTTTGACATACCCACTGTGGCAAATAGCATTGGGATTACAACTATTGATATTTTAAATCAGTTGCAGAACCTGAAGTTGAAAGGAGAAATAACATATGAGATGAAGGATCCAGCCTATTGTTACACAATTGTGGATGTTCCTGGAGATCTTTGTTGCCTGGCAGCACATCTTACAAAATGGTTATCCGAGGTCGAAAGTTGTAAGGTACAAAAATTAGATACGATGTTTAATGCTGCTGTCTCAGCAGTGGAACTATGTGAGAAGAAGTGCGGCTGCCTTGGTGCCCAGCATACACCATGCTTGCAAAGAAAGATTTCAGATTACTTTAGTGGAGATGGTAATGGCGACATTCCTAATAAGATGGATCAAAGCAGCCCATTTTTGCGAGCAGATATAAAGGTATTTCTGCAGAGCAATTCACAGGTCAAGTTTACTCCCAGAGCTGTTGCAAGGATAATGCATGGCATTGCTAGCCCAGCCTATCCTTCTGCAACTTGGTCCAGAACTCATTTCTGGGGTAGGTACATGCAGATGGACTTCCAAGTGGTAATGAAGGCAGCAAAGGCAGAGCTCATGAATTTTGTTGGAAAGGATGCACTCTAG 2826 0.4483 METDSDSDSDASHVSATPPRDRSPPPPQQAPQPPPPPPPPPPPLSILLSSIKSRTKARPSSTAKPKPSSKSTKPCLNSNSNPNHNHNPNPDSIPPHHHPFSLPNLRFSGQNHPIYAVNSFETLPAGYFSKVASFSKLQKPCPKPDPVENEPSLASGLTPKQPHACEAVSTGSAVKFVKKHCNLIGSDVNPKPVKRPKCGSEGNFVRLNINGYGRKFTNKGKRKSYNASSGARRTFRRTKRKSKAEGGAEEDEDGLVLETPTMEKQGRVKFDGELIEAAALEVQNEASDEKLVKLLGLTHGYDSFRDGQLEAIRMVLEGKSTMLVLPTGAGKSLCYQLPALVLPGITLVVSPLVALMIDQLKQLPPMIPGGLLSSSQSAEETSETLRQLREGTIKVLFVSPERFLNAEFLSIVSAGPPISLVVVDEAHCVSEWSHNFRPSYMRLRASLLHAVLNAKCILAMTATATSRTLHAVMHALEIPAANLIQKAQLRDNLQLSVSLSKNRMKDLMMLIKSPPFIEVQSIIIYCKFQSETDSISKYLCDNNISAKSYHSGIPAKDRSRTQELFCSNKIRVVVATVAFGMGLNKSDVGAVIHFSLPESLEEYVQEIGRAGRDGNLSYCHLLFDDITYFKLRSLMHSDGVDEYAVNRFLSQVFSNGMGSPGKVHSIVKEAASRKFDMKEEVMLTILTHLELGEVQYLSLLPPLNVTCSLNFHKTTPALLADWDIVVAAILKKSETKQGHYVFDIPTVANSIGITTIDILNQLQNLKLKGEITYEMKDPAYCYTIVDVPGDLCCLAAHLTKWLSEVESCKVQKLDTMFNAAVSAVELCEKKCGCLGAQHTPCLQRKISDYFSGDGNGDIPNKMDQSSPFLRADIKVFLQSNSQVKFTPRAVARIMHGIASPAYPSATWSRTHFWGRYMQMDFQVVMKAAKAELMNFVGKDAL* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1345 941 CDD SF2_C_RecQ 490 623 - -
Vvi1g1345 941 MobiDBLite consensus disorder prediction 217 260 - -
Vvi1g1345 941 Pfam Helicase conserved C-terminal domain 520 613 IPR001650 -
Vvi1g1345 941 SMART helicmild6 533 614 IPR001650 -
Vvi1g1345 941 Gene3D - 275 482 IPR027417 -
Vvi1g1345 941 PANTHER DNA HELICASE RECQ FAMILY MEMBER 283 809 - -
Vvi1g1345 941 MobiDBLite consensus disorder prediction 138 160 - -
Vvi1g1345 941 Pfam DEAD/DEAH box helicase 306 469 IPR011545 GO:0003676|GO:0005524
Vvi1g1345 941 MobiDBLite consensus disorder prediction 19 46 - -
Vvi1g1345 941 MobiDBLite consensus disorder prediction 1 105 - -
Vvi1g1345 941 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 633 IPR027417 -
Vvi1g1345 941 MobiDBLite consensus disorder prediction 48 87 - -
Vvi1g1345 941 FunFam ATP-dependent DNA helicase Q4 273 482 - -
Vvi1g1345 941 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 656 IPR001650 -
Vvi1g1345 941 SMART ultradead3 300 486 IPR014001 -
Vvi1g1345 941 Gene3D - 490 680 IPR027417 -
Vvi1g1345 941 FunFam ATP-dependent DNA helicase Q-like 5 490 681 - -
Vvi1g1345 941 NCBIfam RecQ family ATP-dependent DNA helicase 297 638 IPR004589 GO:0004386|GO:0006310
Vvi1g1345 941 CDD DEXHc_RecQ4-like 292 485 - -
Vvi1g1345 941 SUPERFAMILY Formin homology 2 domain (FH2 domain) 33 43 - -
Vvi1g1345 941 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 419 428 IPR002464 -
Vvi1g1345 941 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 312 482 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1345 Vvi-Chr1 19639325 19648549 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1345 523 646 Eukaryotic Initiation Factors Gene Family AT3G19760 28.571 1.61e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1345 K10730 - vvi:100256355 1746.48