Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1341 ATGGCGGCAGGAAGGCACGGGGGTTATCGTGATAATGAATTTAAGGAGCGGGAGTCTGATTTAGATGTGTCAAGGCGGAATTTTGCTTATTCTAAGGACGAGTATGATCGGAGTAGGAACGGTAACCGTGAGGGTCGGATTAGGGATTCGAGAGAGAGGAATAGGGTTAGACAGAAGGATATTAAGGAGAGGGAATCAATAAATGGTGGATACCGGTCTTCTTCTAGTAGAAGTGATTCTGGAAGTAGTGGTGGTGGTGGTGGTGTGCCTAGACGATGTGTTTTTTCGGTTAGGACTGCTGACCGTGAGCCTGGTGAGTTGTCAAGTGAGAGTGGATCGGATGATGGCATCGAGTCGGAGTCGCAGGCTAATAATGAGTTTTCAAAGGTGGAGAATGGGATTCGGTCGCCTTTGGATAGGAAGAGGAAGTTTTCACCTATTGTGTGGGATAGAGAAGATAAAGAATCGAATAATTCTTCCAAAAGTAGAATTGCCTCAACAGCAACTGCCCTTCCTCCTCCCCCTCCACTGCCTAAGACATACCGCCAGTCACCAAAACTTATTCAAGATGAGGGTATGCGGGTTTCTCCGGCCAAAAATAGCAAGATTCAGCGTTCACAACTGCCACCATCACCAAGCCTCCCTCCGGTGGCACCTTTGTCAGTTACCCTTGATGTGTCTAGTTCTCCCATTGAGTTGAACACTTCTTCACCTCAAGAGCAGCGGTGGAGTAATGAAAAAGAAGCAGACCAAATTGAAGATGAAGATTATGTTCCCACTCGGAACATATCATCATCACGATGGGCAGATGAAGCCAATTCCCCAGTTGATGAGGGTGAAATTTTGGATGATGAGGAAATTCCTAAGAGGAGGAAGAAAATGTTTCTTTCTGAGGGCTTGGAGCCCAGGGTACTCAAGAAATCTGTGAGTCCTGAGCTTGGGGAGCTTAAGAGGGAAGGTTCTGAAGGAGCAAGGGCAAAGTCAACTGACTCTGATGAAAGAGGCAACCGTGGTAGGTCAGGTACTAGGGAAGATTACCCAGATAATAACTCAGACAGGAATGACTATATGGAAATTGAGGACTATCATAACAATGATGCTAGTGCGAGGCAGTCAGATACAGATTCTGAGCATGAAAATGTTTCTCGGGAGACTCCAGAACCTGCACTCCCACCACAAAGAAGTGTAAATATGCTTCAAGGATGTAGAAGTGTTGACGAGTTTGAGAGATTAAATAAGATAGATGAAGGCACTTATGGTGTTGTGTACAGAGCTAAAGATAAGAAGACGGGAGAAATCGTAGCCTTGAAGAAGGTGAAGATGGAGAAAGAAAGAGAAGGTTTTCCTTTGACTTCACTGAGGGAAATAAACATACTTCTTTCCTTTCATCACCCTTCAATTGTTGATGTTAAAGAAGTCGTGGTAGGGAGCAATCTTGACAGTATATTTATGGTTATGGAATACATGGAGCATGATCTTAAGGGGCTGATGGAGACAATGAAGCAGCCATTTAGTCAGAGTGAAGTTAAATGCTTAATGCTCCAGTTATTGGAGGGGATTAAGTATCTCCATGATAACTGGGTTCTTCATCGGGATTTGAAGACATCAAATCTACTTTTGAATAATAGGGGTGAGTTGAAGATTTGTGATTTTGGATTGGCTCGGCAATACGGGAGCCCTTTGAAACCATATACTCATTTGGTGGTTACTCTATGGTACAGGGCGCCAGAACTTTTGTTGGGAGCAAAGCAATACTCAACAGCAATTGACATGTGGTCGTTAGGTTGCATAATGGCTGAACTGTTATCAAAGGAACCACTGTTCAATGGGAAAACTGAACTTGATCAGATTGACAAGATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCAGTATAACCTACTGCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTATGACCCTGAGAAGAGGATTACAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGGCGCGTGCGAAGAATAATGAAGAGTCCAGATCCTTTAGAAGAGCAGCGTAGAAAGGAGTTGCAGCAAGGGGAATTAGGAGCTGGTGGTTTGTTTGGCTAA 2265 0.4419 MAAGRHGGYRDNEFKERESDLDVSRRNFAYSKDEYDRSRNGNREGRIRDSRERNRVRQKDIKERESINGGYRSSSSRSDSGSSGGGGGVPRRCVFSVRTADREPGELSSESGSDDGIESESQANNEFSKVENGIRSPLDRKRKFSPIVWDREDKESNNSSKSRIASTATALPPPPPLPKTYRQSPKLIQDEGMRVSPAKNSKIQRSQLPPSPSLPPVAPLSVTLDVSSSPIELNTSSPQEQRWSNEKEADQIEDEDYVPTRNISSSRWADEANSPVDEGEILDDEEIPKRRKKMFLSEGLEPRVLKKSVSPELGELKREGSEGARAKSTDSDERGNRGRSGTREDYPDNNSDRNDYMEIEDYHNNDASARQSDTDSEHENVSRETPEPALPPQRSVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEREGFPLTSLREINILLSFHHPSIVDVKEVVVGSNLDSIFMVMEYMEHDLKGLMETMKQPFSQSEVKCLMLQLLEGIKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTELDQIDKIFRTLGTPSETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHDWFREVPLPKSKDFMPTFPAQHAQDRRVRRIMKSPDPLEEQRRKELQQGELGAGGLFG* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1341 754 MobiDBLite consensus disorder prediction 1 394 - -
Vvi1g1341 754 Pfam Protein kinase domain 408 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1341 754 MobiDBLite consensus disorder prediction 133 159 - -
Vvi1g1341 754 MobiDBLite consensus disorder prediction 8 67 - -
Vvi1g1341 754 MobiDBLite consensus disorder prediction 283 300 - -
Vvi1g1341 754 Gene3D Phosphorylase Kinase; domain 1 393 490 - -
Vvi1g1341 754 SMART serkin_6 408 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1341 754 MobiDBLite consensus disorder prediction 68 83 - -
Vvi1g1341 754 ProSiteProfiles Protein kinase domain profile. 408 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1341 754 MobiDBLite consensus disorder prediction 222 242 - -
Vvi1g1341 754 SUPERFAMILY Protein kinase-like (PK-like) 400 705 IPR011009 -
Vvi1g1341 754 Gene3D Transferase(Phosphotransferase) domain 1 491 731 - -
Vvi1g1341 754 MobiDBLite consensus disorder prediction 308 384 - -
Vvi1g1341 754 MobiDBLite consensus disorder prediction 730 754 - -
Vvi1g1341 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vvi1g1341 754 MobiDBLite consensus disorder prediction 243 257 - -
Vvi1g1341 754 FunFam cyclin-dependent kinase G-2 isoform X1 393 490 - -
Vvi1g1341 754 MobiDBLite consensus disorder prediction 112 131 - -
Vvi1g1341 754 PANTHER CELL DIVISION PROTEIN KINASE 406 705 - -
Vvi1g1341 754 FunFam Cyclin-dependent kinase G-2 491 730 - -
Vvi1g1341 754 CDD STKc_CDC2L1 402 699 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1341 Vvi-Chr1 19607521 19610788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1341 399 747 Core Cell Cycle Gene Families AT5G10270 44.324 1.66e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Vvi1g1341 Pkinase 3.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1341 K08818 - vvi:100246062 1406.73