Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1330 ATGAAAGGTTACAAGGTTGCAGTTTGTGGGTCAGTTGGATCTGGCAAATCAAGCTTACTCTGTAGCATACTTGGCGAGATCCCCAGGATCTCTGGGACAGGAAGTAAGGTATATGGATCAAAAGCTTATGTCCCACAGAGTGCTTGGATTCAAACTGGGACAATCAGGGATAATGTGTTGTTTGGAAAGGAAATTAACAAGGCTTTCTATGAGGATGTCTTGGAAGCATGTGCTTTGGATAGGGACATTCAGCTTTGGTATAATGGAGACTTGAGTGTTGTGGGAGAGCGAGGGATGAACTTGAGTGGAGGGCAAAAGCAGAGGATCCAACTGGCAAGGGCAATCTATAGCAAGCAACATCTCATGCTCTTCTTTTTCACTACTGTCATTTATGTCACCCATCAGCTGGAGTTCTTGGATGCTTCAGACCTTGTGATGAAGGATGGCATAATAGTTCAATCTGGAAAATATGAAGATTTGATTGCAGATCCAAATAGTGAACTTGTTAGACAGATGACTGCCCACAACAAATCTCTAGACCAAGTGAACCCATCCCAAGAGAACTGCTTCACCAATAAACCCCCGCAGAAAAAGAAAATTGACCTCATAGAAGAAAATTCGCATGACCCCATCAGCAATGGCAAGCTTTTAGATGGAATCCATAAGGAAGAAACAGAATCTGGTCGGGTAAAATGGCATGTTTATTCAACCTTTATCACTTCTGCCTATAAAGGAGGTCTGGTTCCAGTTATCCTTTTGTGTCAAGTTCTATTCCAAGGGCTGCAGATGGGCAGTAATTACTGGATTGCTTGGGCAACTGAGGAAGAAGGCAGGGTTAGCAGAGAGCAGTTGATAGGGGTATTTTCTTTGTTGTCTGGGGGAAGCTCCATATTCATATTAGGAAGGGCAGTTCTGTTATCAACTATCGCCATTGAGACTGCACGCCACCTCTTCTCTGAAATGATCAAAGCAGTTTTTCGGGCACCCGTTTCATTCTTTGACTCAACCCCCTCAAGTCAAATCCTCAATAGATCTTCTACAGATCAAAGCACAGTAGACACAGACATTCCATACAGATTGGCTGGATTAGCATTTGCACTTATTCAGCTATTAAGTATCATTGTTCTCATGTCCCAAGTTGCCTGGCAGGTCTTCCTTCTCTTTGTATCCATCCTTGCGATCTCCATATGGTATCAGGCTTACTACATTGCTACTGCCAGAGAATTAGCTAGGATGGTTGGGGTTCGAAAAGCTCCAATCCTCCACCACTTTTCAGAATCTGTCGCTGGGGCAGCAACAATTCGTTGCTTCAGTCAAGACGATCGCTTCTTGAGAAGAAATCTCAGCTTGATTGATGATTATTCTCGTGTTGCCTTCCACAACACTGCCACAATGGAATGGCTCTGCGTTCGGATAAACTTTCTTTTCAACCTTGTTTTCTTTTTGGTGCTTGTCATCCTGGTGAGCTTGCCGAGGTCAGCCATTAGTCCCAGTTTGGCAGGACTGGCAGCTACATATGGTTTGAATCTAAATGTTCTCCAAGCCTGGGTGATATGGAACCTATGCAATGTAGAGAACAAAATGATTTCAGTGGAGAGAATTCTTCAATTCACCAAAATACCAAGTGAAGCTCCATTAGTGATTGAGAATTGTAGGCCAAGCCTTGAATGGCCAAGCAATGGAAGAATAGACCTCGACAACCTCCATGTCCGATATACCCCTACTCTCCCAATGGTTCTCAAAGGTATAACTTGCACCTTCCCAGGAGAAAGGAAAATTGGTGTTGTGGGCAGAACAGGAAGTGGAAAGTCAACATTAATCCAAGCTCTCTTCCGAGTCGTTGAGCCCTCAGAAGGCCAGATACTCATTGATGGGGTAGATATCAGTAAGATGGGTTTGAAGGATTTGAGGTCTCGCTTGAGCATAATTCCTCAAGACCCAACACTGTTTCAAGGAACCATGAGAACTAATTTGGATCCTCTAGGAGAGCATTCAGATCAAGAAATCTGGGAGGTGCTGAACAAGTGTCGTCTTGCAGAGATTATAGGACAGGATAAGGGGCTTCTTAATGCACGAGTTGCAGAAGATGGAGAAAATTGGAGTGTTGGACAAAGGCAGCTTGTTTGCCTGGCTAGAGTTCTACTGCAGAGGAGGAAAATTCTGGTGTTGGATGAGGCTACAGCTTCAGTGGACACGGCAACAGATAATTTGATTCAGAAAACAATAAGAGAAGAAACAAGCAAATGCACAGTCATCACGGTCGCCCATCGCATACCCACTGTCATTGACAATGACCTGGTTCTGGTCCTGGATGAAGGCAAGGTTGTTGAGTATGACTCACCGCCTCAGTTACTCAAGGACAGTTCTTCTGCATTCTCGAAATTGGTGATGGAGTTCCGGAGGAGATCATCCAAGAGTAGTTCGTCATGA 2430 0.4424 MKGYKVAVCGSVGSGKSSLLCSILGEIPRISGTGSKVYGSKAYVPQSAWIQTGTIRDNVLFGKEINKAFYEDVLEACALDRDIQLWYNGDLSVVGERGMNLSGGQKQRIQLARAIYSKQHLMLFFFTTVIYVTHQLEFLDASDLVMKDGIIVQSGKYEDLIADPNSELVRQMTAHNKSLDQVNPSQENCFTNKPPQKKKIDLIEENSHDPISNGKLLDGIHKEETESGRVKWHVYSTFITSAYKGGLVPVILLCQVLFQGLQMGSNYWIAWATEEEGRVSREQLIGVFSLLSGGSSIFILGRAVLLSTIAIETARHLFSEMIKAVFRAPVSFFDSTPSSQILNRSSTDQSTVDTDIPYRLAGLAFALIQLLSIIVLMSQVAWQVFLLFVSILAISIWYQAYYIATARELARMVGVRKAPILHHFSESVAGAATIRCFSQDDRFLRRNLSLIDDYSRVAFHNTATMEWLCVRINFLFNLVFFLVLVILVSLPRSAISPSLAGLAATYGLNLNVLQAWVIWNLCNVENKMISVERILQFTKIPSEAPLVIENCRPSLEWPSNGRIDLDNLHVRYTPTLPMVLKGITCTFPGERKIGVVGRTGSGKSTLIQALFRVVEPSEGQILIDGVDISKMGLKDLRSRLSIIPQDPTLFQGTMRTNLDPLGEHSDQEIWEVLNKCRLAEIIGQDKGLLNARVAEDGENWSVGQRQLVCLARVLLQRRKILVLDEATASVDTATDNLIQKTIREETSKCTVITVAHRIPTVIDNDLVLVLDEGKVVEYDSPPQLLKDSSSAFSKLVMEFRRRSSKSSSS* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1330 809 Gene3D - 546 799 IPR027417 -
Vvi1g1330 809 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 563 797 IPR003439 GO:0005524
Vvi1g1330 809 ProSitePatterns ABC transporters family signature. 101 115 IPR017871 GO:0005524|GO:0016887
Vvi1g1330 809 Gene3D - 125 204 IPR027417 -
Vvi1g1330 809 Gene3D ABC transporter type 1, transmembrane domain 218 544 IPR036640 GO:0005524|GO:0016020
Vvi1g1330 809 CDD ABCC_MRP_domain2 561 781 - -
Vvi1g1330 809 Pfam ABC transporter transmembrane region 282 490 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g1330 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 789 IPR027417 -
Vvi1g1330 809 Pfam ABC transporter 2 123 IPR003439 GO:0005524
Vvi1g1330 809 FunFam ABC transporter C family member 3 546 798 - -
Vvi1g1330 809 Gene3D - 1 124 IPR027417 -
Vvi1g1330 809 SMART AAA_5 589 780 IPR003593 GO:0016887
Vvi1g1330 809 SMART AAA_5 2 179 IPR003593 GO:0016887
Vvi1g1330 809 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 801 - -
Vvi1g1330 809 FunFam ABC transporter C family member 5 213 544 - -
Vvi1g1330 809 CDD ABC_6TM_ABCC_D2 248 538 IPR044726 GO:0140359
Vvi1g1330 809 SUPERFAMILY ABC transporter transmembrane region 248 545 IPR036640 GO:0005524|GO:0016020
Vvi1g1330 809 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 250 526 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi1g1330 809 Pfam ABC transporter 580 728 IPR003439 GO:0005524
Vvi1g1330 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 164 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1330 Vvi-Chr1 19528631 19532161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1330 539 809 Calmodulin-binding Proteins AT2G36910 30.796 4.48e-32 132