Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1328 ATGTACTTGCCCGAAAAGCCTCGTCCACTCGATTTCTACAAGGAAGAAGAAGAGGGCCGCGACATGATGATCGAGGTGGTCTCCAATGGCGGGCTTCCACATCAGCAGCAGCAGATGATTCTCGGCGACAGCAGCGGCGAGGACCACGAGCCCAAGGCCCCCAAGAAGCGAGCCGAGACTTGGGTCCAAGACGAGACTCGAAGTCTCATAGCATTTCGGAGAGACATGGACTGTTTGTTTAATACTTCCAAGTCGAATAAGCATTTGTGGGAGCAGATTTCGGCGAAAATGAGAGAGAAGGGCTTCGATCGTTCGCCGACTATGTGCACCGACAAGTGGAGGAACTTGTTGAAAGAGTTCAAGAAAGCCAAGCATCAAGATAGGGGAAGTGGGTCGGCGAAGATGTCGTATTATAAGGAAATTGAAGAGATTTTGAAGGAGCGGAGCAAGAATGCGCATTACAAGAGCCCCACCATGTCAAAAGTCGATCCCTTCATCCAATTCTCCGATAAAGGTATTGATGATACCAGCATTCCATTTGGACCAGTCGAAGTTCCCTGGTCTACAGCTAGTGGCAGGCCAACACTCAATCTTGAGAGACAGTTGGATCATGATGGACATCCTCTTGCTATAACCTCAGCTGATGCAGTCACTGCAAATGGAGTTCCTCCTTGGAACTGGAGAGAGACCCCTGGAAGTGGTGGTGAGAGTCAATCATATGGTGGGAGGGTAATATCAGTCAAGTGGGGGGATTATACAAGAAGGATTGGTATTGATGGCACTGCAGATGCCATCAAGGAAGCAATCAAGTCTGCATTCAGGTTAAGAACTAAACGTGGATTTTGGCTGGAGGATGAAGATCAGATAATTCGGACTCTTGACAGGGACATGCCTTTGGGAAGCTACAGTCTTCACCTTGATGAAGGAATAGGCATAAAAGTGTGCCATTATGATGAGTCGGAGCACATACCAGTCCACACAGAGGAGAAGACGTTTTATACTGAAGAAGATTTCCGTGATTTTCTGACCCGTCGGGGATGGTCTTCTCTTAGGGAGTTAAATGGGTACAGAAACATTGACAATATGGATGATCTTCGTCCTGATTCATTATACCGTGGGATGAGTTAA 1128 0.4752 MYLPEKPRPLDFYKEEEEGRDMMIEVVSNGGLPHQQQQMILGDSSGEDHEPKAPKKRAETWVQDETRSLIAFRRDMDCLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGSGSAKMSYYKEIEEILKERSKNAHYKSPTMSKVDPFIQFSDKGIDDTSIPFGPVEVPWSTASGRPTLNLERQLDHDGHPLAITSADAVTANGVPPWNWRETPGSGGESQSYGGRVISVKWGDYTRRIGIDGTADAIKEAIKSAFRLRTKRGFWLEDEDQIIRTLDRDMPLGSYSLHLDEGIGIKVCHYDESEHIPVHTEEKTFYTEEDFRDFLTRRGWSSLRELNGYRNIDNMDDLRPDSLYRGMS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1328 375 FunFam trihelix transcription factor GT-1 61 123 - -
Vvi1g1328 375 Gene3D - 61 123 - -
Vvi1g1328 375 Pfam Myb/SANT-like DNA-binding domain 60 144 IPR044822 -
Vvi1g1328 375 ProSiteProfiles Myb-like domain profile. 53 117 IPR001005 -
Vvi1g1328 375 CDD GT1 59 124 - -
Vvi1g1328 375 PANTHER FI21293P1 36 373 - -
Vvi1g1328 375 SMART sant 57 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1328 Vvi-Chr1 19500264 19509123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1328 21 374 Trihelix Transcription Factor Family AT3G25990 68.579 2.83e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vvi1g1328 Myb_DNA-bind_4 9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1328 - - vvi:100249383 763.451