Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1320 ATGGAAATGAAGATTGATATCCTTTCAACACAGCCCATCAAGCCATCTTCTCCAACTCCAAATCATCTCAGAAGCTTCAAAATCTCGCTATTGGATCAACTTGCTCCTCCCTTTTATGTCCCTGTTATCCTACTCTTCTCTGCTGATGATTTCGACTGTGAAGCTGTTGATCACGTCACCATATGTGATCTGCTGAAGAGGTCTCTCTCCCAAACCTTAAGCCGCTTCTATCCTTTAGCTGGGAAGCTCAAAGGAAATGACAGTGTGGATTGCAGTGATGATGGCGCTGTGTTCATGGAGGCTCGAGCAAACGTTGAGCTCTCAGAAATTCTGAGAGACCCGGAGATAGATTTGTTGCAGAAGCTTCTCCCATGTGAACCGTACAGTGTGGGATCAGAATCATCAGATAGAGCAATCACAGCCATTCAAGCAACAATTTTCGAGTGTGGCGGAATAGGAATTGGAGTATGCATGTCACACAAGGTGGCCGATGGGGCAACGCTGGCCACTTTCCTCACCGCTTGGTCTGCAACAGCAATGGGTACAGATGATGGCATCACTCCCTTTTTGGACTCAGCGTCCCTCTTCCCACCAAGAGATATCAATACGGTACTGTCCAGTGGTGTGATCAGCCACGGTAAAACTCTAACAAGGAGATTCTTATTTGATGCAGCAAGCTTAGCCCGCCTGCAGTCCAAAGCATCCAATTCTACCCGTGTAGAAGCTGTTACATCTCTGATATGGAAGTCAGCCATGGATGTGGCCAGAGAAAAATCAGGGAAGGACACCATATCATCCATTGTCACACATGTAGTGAATCTACGGGGGAAGACAGAGCCACCACTGTCGGATCGCTCTTTAGGAAACCTATGGCAGCAAGCAGTTGCAACAGTAACGGAGCAGGAAGGCAAGGTAGAGCTGGATGACTTGGTGGGAAGGCTGAGAAGAGCAATAAAAAAGGTAGATAAGGAGTATGTGAAGGAGATTCAAGGCGAAGAAGGGCTATCAAAGGCTTGTGGAGCCATGAAAGAAGTCCAGAAAATGATCATGTCCAAGGGAGAGATGGAGCTGTACAGGTTTAGCAGTTGGAGCAGATTTCCATTTTATGAAACTGATTTTGGGTTTGGGAGGCCTATCTGGGTGTGCACTATTACTGCGCCTATCAAGAATGTGATCATTTTGATGGACACAAAATCTGGGGGTGGAATAGAGGCTTGGGTGACAATGGTTGAAGAAGACATGACCAAATTCCAACGCCACTATGAGCTTCTGGAGTTCGTTTCATCAACACAAAGTGCTTAA 1302 0.4654 MEMKIDILSTQPIKPSSPTPNHLRSFKISLLDQLAPPFYVPVILLFSADDFDCEAVDHVTICDLLKRSLSQTLSRFYPLAGKLKGNDSVDCSDDGAVFMEARANVELSEILRDPEIDLLQKLLPCEPYSVGSESSDRAITAIQATIFECGGIGIGVCMSHKVADGATLATFLTAWSATAMGTDDGITPFLDSASLFPPRDINTVLSSGVISHGKTLTRRFLFDAASLARLQSKASNSTRVEAVTSLIWKSAMDVAREKSGKDTISSIVTHVVNLRGKTEPPLSDRSLGNLWQQAVATVTEQEGKVELDDLVGRLRRAIKKVDKEYVKEIQGEEGLSKACGAMKEVQKMIMSKGEMELYRFSSWSRFPFYETDFGFGRPIWVCTITAPIKNVIILMDTKSGGGIEAWVTMVEEDMTKFQRHYELLEFVSSTQSA* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1320 433 PANTHER F21J9.9 6 428 - -
Vvi1g1320 433 Pfam Transferase family 3 423 - -
Vvi1g1320 433 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g1320 433 Gene3D - 1 204 IPR023213 -
Vvi1g1320 433 Gene3D - 213 427 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1320 Vvi-Chr1 19398867 19400168 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1320 3 419 Monolignol Biosynthesis Gene Families AT5G48930 23.077 2.34e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1320 - K13065 vvi:100266558 856.67