Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1319 ATGAAACCGGAGATAATATCCCGACAAACCATCAAACCTTCCTCTCCCACCCCAGATTCCAAAAAAATTTACAAGCTCTCCTTATTAGATCTACTTATTGCTAATCGCATTTATGTGCCTATCATCTTCTTCTATCAGAACAAGGAAGGGGATAACTCAGTTGATGTCGCCCATATATCAAGTGGGCTCAAGAAATCCCTATCTGAAACCCTAACCCATTACTATCCACTAGCTGGAAGGATCAAAGATGGAGTTACGGTTGAGTGCAACGATGAGGGAGCCTATTTTTCCGAAGCCCGAATTGATTGCCACCTGGAAGGATTTCTAAAACATCCAGAGGCTCGGGATTATTTAGACCTGCTTATGCCAGTTGAAATCCAATCGAACAGCTCAGACATGGGCAGTTTATTGCTTATTCAGATCACCTTTTTCAGCTCAGCTTCTCCTGTATGCATTTTCGCCCCAACCATATTGCATATGACTCAAACATTGGTTCAACTCGCATATATATGTCTATTCAAACTCATCACCCAAAAACACGGTTTGTAA 549 0.4171 MKPEIISRQTIKPSSPTPDSKKIYKLSLLDLLIANRIYVPIIFFYQNKEGDNSVDVAHISSGLKKSLSETLTHYYPLAGRIKDGVTVECNDEGAYFSEARIDCHLEGFLKHPEARDYLDLLMPVEIQSNSSDMGSLLLIQITFFSSASPVCIFAPTILHMTQTLVQLAYICLFKLITQKHGL* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1319 182 Gene3D - 1 161 IPR023213 -
Vvi1g1319 182 Pfam Transferase family 4 146 - -
Vvi1g1319 182 PANTHER F21J9.9 4 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1319 Vvi-Chr1 19370001 19372078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1319 1 144 Monolignol Biosynthesis Gene Families AT5G48930 29.730 1.04e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1319 - - vvi:100257978 291.197