Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1316 ATGAAACCAGAGATAATATCCAGAGAAACTATCAAACCTTCCTCTCCAACCCCACATTCCCAAAGATGGTACAAGCTCTCCGTATTCGATCAAATGAGTTATGGCGTGTATATTCCCATCATCCTATTCTACACCAGCAATGGCGGTGATAACCCATGCAATGATAAGGGGGTTGATTTCTTTGAAGCCCGGATGCACTGTCATCTGCAAGGATTTCTAAATCATCCTGAGTTTGAGGCTCTGAACCTGCTTGCTCAAGGTCAAATCCAGTGTAACAACTTAGATTTGAGCAGTACATTGATCGTTCAGATCACCTTCTTCGATTGCGGGGGAATGGCCATTGGGGTGTCTATGTCACACAAGGTTGCTGATATATCCTCCATGAGCGCCTTCTTAAATGACTGGGCCACGATGGCACGGCAATCAGGTGAAGCAGAAATCTCCGCTCAGTTCATCACTTCATTCTTCCCACCTCATGATTCATTAGACATACCTGAGTATGTGCCAAGGAAAATAAATCGTGTGGTAAGGAGGTTTGTATTCAATGCCTCAAAGTTAGATGCACTCAAGACCTTGGCTACTAGCCATGGAGTAGAAAATCCCACACGGGTCCAAGTTGTAACTGCACTACTATATAAATGTGCCGATGCTGCATCTAGAGCAGTCTCAGATTCACCGAGGGCATCGGACTTGGTACAAATGGTGAACCTGCGCAGACTAGTAATCCCGCCATTGCCAGACAAGTCCTTTGGAAACTTGGTTTGGTGCTTTTCAATATCTGCCACCGAGGAGGGTGAAGTTGAGTTCCATGACTTGGTGGCCCAGTTGAAGGAAGGGATAGCAGGTTTTCGTCTTACCTATGGAATAAGTTTTAGTTGGTATGAATTGTCCCGGCTGGTTTCTGAGTTTAGGAAAGCATCTGCAAGCTCATTCAAGAGGAAGGGGAATATGGTTAGGTTTACATGTACTAGCTGGTGTAGGTCCCCATTATACCAAGTGGATTTTGGGTGGGGAAAACCCGTATGGATTAGCTGCACAAATGTTATGTGGAATACCTTTATTTTGATGGATACTAGAAGTGGAGATGGAATAGAAGCGTTGGTTAGTCTTGAAGAACAAAACATGAACGTATTTGAACATGATGAGGAGCTCCTTCGATTCGCCTCTTTGAATCCAAATGCTTTTGAAGCCCCTTGA 1197 0.4453 MKPEIISRETIKPSSPTPHSQRWYKLSVFDQMSYGVYIPIILFYTSNGGDNPCNDKGVDFFEARMHCHLQGFLNHPEFEALNLLAQGQIQCNNLDLSSTLIVQITFFDCGGMAIGVSMSHKVADISSMSAFLNDWATMARQSGEAEISAQFITSFFPPHDSLDIPEYVPRKINRVVRRFVFNASKLDALKTLATSHGVENPTRVQVVTALLYKCADAASRAVSDSPRASDLVQMVNLRRLVIPPLPDKSFGNLVWCFSISATEEGEVEFHDLVAQLKEGIAGFRLTYGISFSWYELSRLVSEFRKASASSFKRKGNMVRFTCTSWCRSPLYQVDFGWGKPVWISCTNVMWNTFILMDTRSGDGIEALVSLEEQNMNVFEHDEELLRFASLNPNAFEAP* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1316 398 Coils Coil 397 398 - -
Vvi1g1316 398 Gene3D - 1 51 IPR023213 -
Vvi1g1316 398 Gene3D - 52 169 IPR023213 -
Vvi1g1316 398 Gene3D - 173 386 IPR023213 -
Vvi1g1316 398 PANTHER F21J9.9 4 48 - -
Vvi1g1316 398 Pfam Transferase family 53 384 - -
Vvi1g1316 398 Pfam Transferase family 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1316 Vvi-Chr1 19335593 19336894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1316 53 379 Monolignol Biosynthesis Gene Families AT5G48930 23.662 5.05e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1316 - - vvi:109123455 793.882