Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1311 ATGGACGACTATACCCCTCAAGCCCTCTGTCTCCTAGCAGTTTTATTCATCACATTGCTCCTCCTACCACCGTCTCCGCCGCCGCTTCCAATCATTGGCCACCTCCACCTCCTCACAGACATGCCCCACCACAGTTTGTCCGACCTCGCCCTCAAACTTGGCCCCATTATCCATCCCCGCCTGGGCCAAGTCGCCACCGTGGTGGTCTCCTCCGCCCGACTCGCCGCCCTCGTCCTCAAAACCCACGATCACGTCTTCGCCAGTCGGCCGCCACTCACCGCCGCCCAGTACCTCTCCTTCGGCTGCTCTGACGTCACCTTCTCCCCCCACGGCACCTATTGGCGCCAAGCCCGAAAAATCTGCGTCACAGAGCTTCTCAGCCCGAAACGAGTCACCTATTTTCAATTCATCCGAAACGAGGAGACCCACCCACCACCTCATCACCTCCCTTCCTCCCTTTCCGCACTCTCCGGCTCGGAAACCGACATGAGCCAGCTCTTCTTCACTCTAGCCAACAACCTCTGTCGCGTGGCTTTCGGCAAGAGATTCATGGACGATTCCGAAGGAGAAAAGAAACACATGGTGGATGTTCTGACCGAAACACAAGCTTTATTCGCCGGCTTCTGTATCGGAGATTTTTTCCCAGACTGGAAATGGCTAAACAGCATCACAGGATTGAACCGAAGACTCAGAAAAAACCTAGAAGAACTGATAGCAGTTTGCAACGAGATTATAGAAGAACATGTAAACGAGAAGAAGGAAAGAGAAGACTTCGTAGGCGTTCTGCTTCGAGTGCAGAAACGGAAGGACTTGGAAGTGGCGATAACAGATGATAATCTGAAAGCTCTGGTTCTGCTCCTCCGCAGGCCAACTTTCTCTCTTCTCCCACTTCCATCAGCCACCTTACCGTCGTTCTTCGTCGACAACAGCGGTGCCGGAGTCCGACGACTCTACCTCCTCCTTATGTCGCTCAATTCCATCTTCGATGGGAACTTGGGGGATCTGAACAAGCAGGCGTGCTTCTTCGACCTCACCAGCGACTCCAAGATGGAGGGTTCTAACTCTCTATAA 1071 0.5369 MDDYTPQALCLLAVLFITLLLLPPSPPPLPIIGHLHLLTDMPHHSLSDLALKLGPIIHPRLGQVATVVVSSARLAALVLKTHDHVFASRPPLTAAQYLSFGCSDVTFSPHGTYWRQARKICVTELLSPKRVTYFQFIRNEETHPPPHHLPSSLSALSGSETDMSQLFFTLANNLCRVAFGKRFMDDSEGEKKHMVDVLTETQALFAGFCIGDFFPDWKWLNSITGLNRRLRKNLEELIAVCNEIIEEHVNEKKEREDFVGVLLRVQKRKDLEVAITDDNLKALVLLLRRPTFSLLPLPSATLPSFFVDNSGAGVRRLYLLLMSLNSIFDGNLGDLNKQACFFDLTSDSKMEGSNSL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1311 356 Gene3D Cytochrome P450 19 288 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1311 356 PRINTS E-class P450 group I signature 74 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1311 356 PRINTS E-class P450 group I signature 169 187 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1311 356 PRINTS E-class P450 group I signature 50 69 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1311 356 Coils Coil 227 251 - -
Vvi1g1311 356 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 15 285 - -
Vvi1g1311 356 SUPERFAMILY Cytochrome P450 23 287 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g1311 356 Pfam Cytochrome P450 23 286 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1311 Vvi-Chr1 19242156 19244752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1311 14 285 Cytochrome P450 AT3G48320 35.563 4.81e-52 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1311 K24541 - jre:108985324 351.673