Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1309 ATGGGTGTCCTTCATTGCATGTACTTTGATACAACTGAAAATCAGATGGCTCATGACCTCTATCTGCCAACTGAGTTCCACAATGGTGAGAGGAGAAATGAGGCGAGTGCTCTTAGTCTCAGTTTATCGGCCATGGCTGGCTGTCCCTTCCCTTGCCTTGCCACATTGATGGACATTTCTTCCACCTGGTTCATTCCCTTCTCAGATGCAACTAGAAACCATAAGAGGCTAAAGCGGGGACTAGGCACTGATCAATCCATCAGGAGTAATAGCTATAGCAGTCTTTATGATGATGGTTGCAATGGGAGAACAAATAGCTTGAATAGCCTGCTGGGACTCCAGTATCAGGATCATATATGGGGCAATGCTCAGAGGTACCTTGCAGTTGAGGCAATAGCAGTAGATGCTGCAGCCATGTTGGGGGGTGGGGTGGATGCAGTCCTGAAAGAAGGGAGCGATGATGGGATGAAACTAGTCCATCAGCTCATCACCTGTGCCAAGGTTGTGGCCTTCCGAGACAAATCACATGCCTCTGCATTACTATCTGAGCTTCGGGCTAATGCCCTTGTCTTTGGAACATCATTTCAGCGAGTTGCTTCCTGCTTTGTCCAAGGACTCTCAGACCGTCTCTCTCTGATTCAGTCACTTGGGGCAGTTGGAGTTGGGGGCTGCACAGTAAAAACAATGGATATTACCCCAGAAAAGGAAGAGGCCTTCCGCCTTTTCTTTGAGATTTGTCCGCAAATTCAATTCGGTCACTTGGCAGCCAATGCATCAATATTGGAAGCCTTTGAGGGAGAGAGTTCAGTCCATGTTGTGGATTTGGGCATGAACCTAGGTTCACCCCAGGGCCAGCAATGGCGCAGCCTAATGCACAGCCTAGCCAACCGGGCAGGCAAGCCACCTAGCAGCCTCCAAATAACTGGTGTTGGAACCGCTGCTGAATGCCTCAAAGACATCATTGATGAGCTAGAGGTCTATGCAGAAAGCTTGGGAATGAACTTCCAATTCTCAATGGTGGAAAGCAACTTAGAGAACCTTCAACCTGAAGATATCAATCTCCTTGAAGGGGAGGCTGTTGTTGTCAATAGCATCCTTCAGTTGCATTGTGTAGTGAAAGAAAGCCGAGGGGCCTTAAATTCGGTTCTACAGAAAATACGCGAGCTATCACCAAAGGCTGTGGTTCTAGTTGAGCAGGACGCAAGCCACAATGGGCCCTTCTTTCTGGGGAGGTTCATGGAGGCGTTGCATTATTATTCAGCTATCTTTGATTCACTAGATGCAATGCTGCCTAAGTATGACACGAGGAGAGCCAAGATGGAGCAGTTCTATTTTGCAGAGGAGATTAAGAACATAATAAGCTGTGAGGGGTCAGCTAGAGTGGAAAGGCACCAAAGGCTTGACCAGTGGCGCAGAAGGATGAGCCGTGCCGGGTTTCAATCATCGCCTATGAAGATGATAACAGAGGCCAAGCAGTGGCTAGAGAAGGTTAAGCTTTGTGACGGTTACACCATTGTGGACGAGAAGGGGTGCTTGGTTCTTGGATGGAAGTCTAAGCCCATCATTGCAGCTTCTTGCTGGAAATGCTCCTAA 1593 0.4827 MGVLHCMYFDTTENQMAHDLYLPTEFHNGERRNEASALSLSLSAMAGCPFPCLATLMDISSTWFIPFSDATRNHKRLKRGLGTDQSIRSNSYSSLYDDGCNGRTNSLNSLLGLQYQDHIWGNAQRYLAVEAIAVDAAAMLGGGVDAVLKEGSDDGMKLVHQLITCAKVVAFRDKSHASALLSELRANALVFGTSFQRVASCFVQGLSDRLSLIQSLGAVGVGGCTVKTMDITPEKEEAFRLFFEICPQIQFGHLAANASILEAFEGESSVHVVDLGMNLGSPQGQQWRSLMHSLANRAGKPPSSLQITGVGTAAECLKDIIDELEVYAESLGMNFQFSMVESNLENLQPEDINLLEGEAVVVNSILQLHCVVKESRGALNSVLQKIRELSPKAVVLVEQDASHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGSARVERHQRLDQWRRRMSRAGFQSSPMKMITEAKQWLEKVKLCDGYTIVDEKGCLVLGWKSKPIIAASCWKCS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1309 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 523 IPR005202 -
Vvi1g1309 530 Pfam GRAS domain family 158 528 IPR005202 -
Vvi1g1309 530 ProSiteProfiles GRAS family profile. 149 528 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1309 Vvi-Chr1 19230763 19232355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1309 147 530 GRAS Transcription Factor Family AT1G66350 34.794 6.22e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi1g1309 GRAS 1.3e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1309 - - vvi:100256348 1043.88