Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1305 ATGGACAGTGCCTTTTGCCCGCCTCGGACCGACGTCTTTCCGGCTGGTCTTCGAGTTCTCGTGGTCGATGACGACCCCACTTGGTTGAAAATCCTTGAAAAGATGCTCAAGAAGTGCTTGTATGAAGTGACCATTTGTGGTTTGGCAAGGGATGCTTTGAACTTGCTTCGGGAAAGAAAAGATGGATATGACATTGTAATCAGTGATGTTAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCTTGTTGGGCTTGAGATGGATCTTCCAGTAATTATGATGTCTGTTGACGGCGAAACAAGCAGGGTAATGAAAGGTGTTCAGCATGGTGCATGCGATTATCTTCTTAAGCCTATAAGAATGAAGGAACTCCGAAACATATGGCAACATGTTTTCAGAAAGAAGATCAATGAGGTGAGAGACATTGAAAGTCATGAAAGCATTGATGATTTTCAAATTATGAGAAATGGACCAGAACAGTCTGATGATGGGTACTTGGTAAGTGGTGATCCTACTTCAGTGAAGAAAAGAAAAGATACTGAGAACAAGCATGACGACAGAGACCATTGTGACCCTAGTTCTGTGAAGAAAGCTAGAGTTGTTTGGTCAGTTGATCTTCATCAAAAGTTTGTCAGAGCGGTGAATCAGATTGGGTTTGATAAGGTTGGTCCAAAGAAAATATTGGACTTGATGAATGTGCCATGGCTTACTCGAGAAAATGTGGCTAGCCACTTGCAGAAATACCGCCTCTACTTGAGCAGACTTCAAAAGGAAGATGATCTAAAAACATCTTGTGGTGGAATAAAGCATTCTGATCTATCACCAAAAGATTCTACTGGAAGCTTTGGCCTTTCGAACTTGACCAACATGCACCAAAATGATGCTGCTAATAGCGGTTATGGATTTTCTGGAAATAAGAAACTTGTGCAGAGTATTGATATTGATCCAAAAGTACAGGAAGGTGACCTGAAGGGGATAATCTCATTGCCAAGGACAGAGCAGAAAAAAATGTTGACTGGTGAAGCTTCTGATCCTCAGAAGGCCAGAAGTTCACAGATGGGTTTCAATGATTCTTTCGGGTCAATAGAGCAAGATGTAAACTATGCAGCATTTGATTCAAGTATCTCAGCACAATACTCTTGGAGTGGAGAAAAAGTTCCTGAAGCTCAGTTTCAGGAAGAACATAGACCAAGTGTTCAGTTGGAGACTAGCTTTAACCAGTTGCCTGTGCCTGGTCCGCAGCATCATATTCAAGTTGATTGCCTGCAGCCTACTTTGCCACCCATCAGTCCTGGATCTTCCAGAAAAGAAAGAGATAAAGCAAGTCCTGCCAAAATCAAGCCCTTGTATGCCAGTTACGATAGCCATCATGTCAGCAATGTAAGTTCAGCAGGAAGTGAAATTGACCTGTTTTCTGTTCAATCAAAGTGCCAAATGGTAAACCCTCAAGCTTTTGAGCCTATTTCAAACATTACACTGAATATGAGAAACCAGGGCCACAACCAGAGTGGTGTGAATGATTTGGAATCCTTTCAAAGGAACCTGATTTCAGGGAGTGGGTCAGCTCTTGAATCATTAGAGGACTTGCAAGTTCATTGGCTCCAAGGTGACTGTAATCCAATGAATCTTGGACTCCGAAACATTGAATTTTCAGATTACCATGACCAGAAGCTTATTACTGAAGTTCCCTTCCACTTGTATGATCCACTTAAGTTAGACTATGAGTATCTCTCTGACTTGACAGAATATCCTATAATGGATCAAGGTCTATTCATAGCATGA 1785 0.4168 MDSAFCPPRTDVFPAGLRVLVVDDDPTWLKILEKMLKKCLYEVTICGLARDALNLLRERKDGYDIVISDVNMPDMDGFKLLELVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKINEVRDIESHESIDDFQIMRNGPEQSDDGYLVSGDPTSVKKRKDTENKHDDRDHCDPSSVKKARVVWSVDLHQKFVRAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKEDDLKTSCGGIKHSDLSPKDSTGSFGLSNLTNMHQNDAANSGYGFSGNKKLVQSIDIDPKVQEGDLKGIISLPRTEQKKMLTGEASDPQKARSSQMGFNDSFGSIEQDVNYAAFDSSISAQYSWSGEKVPEAQFQEEHRPSVQLETSFNQLPVPGPQHHIQVDCLQPTLPPISPGSSRKERDKASPAKIKPLYASYDSHHVSNVSSAGSEIDLFSVQSKCQMVNPQAFEPISNITLNMRNQGHNQSGVNDLESFQRNLISGSGSALESLEDLQVHWLQGDCNPMNLGLRNIEFSDYHDQKLITEVPFHLYDPLKLDYEYLSDLTEYPIMDQGLFIA* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1305 594 FunFam Two-component response regulator 17 202 - -
Vvi1g1305 594 FunFam Two-component response regulator 194 257 - -
Vvi1g1305 594 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vvi1g1305 594 SUPERFAMILY CheY-like 16 137 IPR011006 -
Vvi1g1305 594 SMART REC_2 17 129 IPR001789 GO:0000160
Vvi1g1305 594 CDD REC_typeB_ARR-like 19 133 - -
Vvi1g1305 594 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Vvi1g1305 594 PIRSF RR_ARR_type-B 2 563 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi1g1305 594 MobiDBLite consensus disorder prediction 155 193 - -
Vvi1g1305 594 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Vvi1g1305 594 MobiDBLite consensus disorder prediction 425 444 - -
Vvi1g1305 594 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vvi1g1305 594 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Vvi1g1305 594 MobiDBLite consensus disorder prediction 173 193 - -
Vvi1g1305 594 Gene3D - 17 165 - -
Vvi1g1305 594 Gene3D - 195 257 - -
Vvi1g1305 594 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 352 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1305 Vvi-Chr1 19206465 19214328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1305 11 256 Response Regulator Gene Family AT2G25180 57.430 5.54e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi1g1305 Response_reg 4.4e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1305 - K14491 vvi:100246057 1207.97