Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1304 ATGTGGCAAAAGCAACACCCACATATGTCTTCTTTCAGGGAATCTGTGAAAACTCTTGAAGCTGATATACAACATGCCAATAACCTGGCAGCTGCTCTTCCAAGAGATTATGGTGGGGAGTCTGGGGACCGTGTCCAGATGAGATTGTCCTACAGCCCCTTTGCTCCTTTCTTCCTGTTTCTTATAGAATGGCTGGATTATAAATGCATGGATACCCTCCCAAGTTATTTAGGCCTTCTCCACATACTTGTGTATAAGGTCTATGTTGATGGAATGCCAACGATGTCCTCACAAGAAAGGAAAGCCACCCTGAGGGAATTCTATGCTGTGATATATCCTTCACTCAGGCAACTCGGAGGCCAGTTTATCGAATTGGAAGATACCAATAAGAGAAGTCGATGCACAGAAGTTTTGAGCAGAAAGAGAGTGGAAGACAGGAGGAAGGTTTCTGATAAAGAGATCGATAGGGATGATGAATGTGGGATCTGCATGGAAACTTGCACCAAGATGGTGTTACCTAACTGTGGCCACTCTATGTGCATCTGCTGTTTTCATGACTGGAATGTGCGTTCTCAGTCCTGCCCTTTTTGTCGAGGCAGCCTAAAGAGAGTTAGCTCTAGAGACTTATGGGTTCTCACTGGCAACATTGATGTAGTCGATACAGTTACTCTTGCGAAGGAGGATTTGAGGCGTTTCTACCTTTATATCGACAACCTTCCTCCCCTAATGCATGATACTCATTCGCTTTTATATGATTACATGATCTGA 768 0.4414 MWQKQHPHMSSFRESVKTLEADIQHANNLAAALPRDYGGESGDRVQMRLSYSPFAPFFLFLIEWLDYKCMDTLPSYLGLLHILVYKVYVDGMPTMSSQERKATLREFYAVIYPSLRQLGGQFIELEDTNKRSRCTEVLSRKRVEDRRKVSDKEIDRDDECGICMETCTKMVLPNCGHSMCICCFHDWNVRSQSCPFCRGSLKRVSSRDLWVLTGNIDVVDTVTLAKEDLRRFYLYIDNLPPLMHDTHSLLYDYMI* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1304 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 228 IPR013083 -
Vvi1g1304 255 ProSiteProfiles Zinc finger RING-type profile. 160 198 IPR001841 -
Vvi1g1304 255 SUPERFAMILY FdhE-like 44 199 IPR024064 -
Vvi1g1304 255 FunFam RING/U-box superfamily protein 140 207 - -
Vvi1g1304 255 Pfam Zinc finger, C3HC4 type (RING finger) 157 203 - -
Vvi1g1304 255 SUPERFAMILY RING/U-box 149 203 - -
Vvi1g1304 255 SMART ring_2 160 197 IPR001841 -
Vvi1g1304 255 PANTHER RING FINGER PROTEIN 41, 151 9 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1304 Vvi-Chr1 19198426 19200080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1304 136 202 C3H Transcription Factor Family AT5G01960 32.353 2.48e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1304 - - vvi:100245965 535.028