Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1303 ATGGGCTTATTCTCCCATTTCTTGGTCTCTTTTCTATGCTTAATAACAACTACTCTCTGCCAAGTTACAGAGTTCATCAGTATAGACTGTGGAGGCACAAGCAATTACACTGATTCAAGGACAGGGCTGCAGTGGATTTCAGACACTGGGGCCATTAGCTATGGAAAATCAGTACAAGTTGAGAATCCATATGGGGGCTGGCTTCAGTATCAGCAACGCAGAGACTTCCCCACAGAAAGCAAGTATTGTTACACTCTGAAAACAGAAGAGAGAAGAAGGTACCTAGTCAGGGCCACATTTCAGTATGGAAGCTTGGAAAGTGAAGGCACATACCCGAAATTTCAGCTCTACTTGGATGCAACCAAGTGGGCAACTGTCACAGTTTTGGAATCAGCGAGAGTATATGTGAAGGAAATGATCATCAGGGCACCCTCGAGCTCCATAGACGTTTGTCTCTGCTGTGCTACTACTGGTTCTCCATTCATATCTACTCTTGAGTTGAGACCTCTCAACCTTTCAATGTATGCCACCGATTTTGAAGATGGTTTCTTCTTGAAAGTTTCAGCTAGAGTGAACTTTGGTGCTCCAAGTGAGGACCCCATAAGGTACCCTGATGATCCATATGACAGAATATGGGAATCTGATCTTGTGAAAAGGCAAAATTATCTTGTGGGGGTGGCTCCAGGCACAGAAAGAGTCAATACATCAAAGCAGATAGACGTAAGAACAAGAGAGTACCCACCTGTTAAAGTAATGCAAACTGCAGTTGTTGGCACAAGAGGAAGGCTCAGCTACAGGTTGAACCTGGAAGATTTCCCAGCCAACGCTCGGGCTTATGCATTTTTTGCTGAAATTGAAGAGTTGGGAGTGAATGAAACACGGAAATTCAGAATGGAGCGACCTTATTTGCCTGACTATAGCAATGCAGTGGTAAATATTGCTGAGAATGCCAATGGGAGCTACTCTCTTTATGAGCCTAGTTACATGAATGTTACTATGGATTTTGTTCTATCATTCTCTTTTGTAAAGACCCGAGACTCTACGCGAGGGCCACTCTTAAGTGCAATTGAGATAAGTAAATATGTGCAGATTGCCCCAAAGACGGACAAGGGAGATGTGACTGTTCTGAATGCCCTTTGCGCCATGTCTACTGAAAGTGCTTGGTCGAATGAAGGACGTGATCCATGTGTTCCAGCTCACTGGTCATGGGTGGCTTGCAGCCCAACAACCACACCAAGAATTACAAAAATTACTTTATCTGGAAAGAATCTGAATGGTGTAATTCCATCTGAGCTTAAGAACATGGAGGGATTGACGGAGTTGTGGCTGGATGGAAATTACCTCACAGGGCCAATCCCAGACATGAGTAATCTTATCAGTCTGAAAATTGTGCATCTAGAGAACAACAGACTGACTGGTCCATTGCCTTCTTACCTTGGTAGTTTGCCAAGCTTACAAGAACTGCATGTGCAGAACAACCTTCTTAGTGGAGAAATACCCCCAGCATTGTTAACCGGAAAAGTAATTTTCAACTATGAAGGTAATAGCAAACTACACAAAGAGGCACACAAGACACACTTTAAGTTGATACTTGGAGCTTCAGTTGGACTGCTTGCACTTCTCTTAGTTCTTTGCATAGGAAGTTTATTCCTATTGTGCAATACTCGAAGAAAGGAATCGCAAAGCAAGAGTAATGACAAAGGAAGTTCTTTGCGTACGAGCACGAAGGCTTCTACTTCTTACTCAATTGCAAGAGGTGGAAATCTAATGGATGAAGGAGTAGCTTGCTACATTTCACTCTCTGACCTAGAGGAAGCTACTAAAAATTTTGCAAAGCAAATTGGCAGAGGAAGCTTTGGACCTGTCTACTATGGGAAGATGCCAGATGGAAAAGAGATTGCAGTTAAGATCATGGCTGATTCATCCAGCCATGGAACCCAGCAGTTTGTAACTGAGGTTGCCCTTTTGTCAAGAATTCATCATAGGAACTTGGTTCCTCTCATTGGATACTGTGAGGACGAACACCAACATCTTCTGGTTTATGAGTACATGCACAATGGAACCCTGCGCAATCACATACATGATTCTACAAACCAGAAGTGTTTAGACTGGCTTGGTCGTCTTTATGTTGCAGAAGATGCAGCTAAAGGTCTTGAGTACTTACACACTGGATGCAACCCCAGTATCATTCACAGAGATGTAAAGACAAGCAATATTCTATTAGACATTAATATGAGGGCAAAAGTATCAGATTTTGGACTTTCAAGGCAAGCTGAAGAAGATTTAACTCATGTATCAAGTGTCGCACGAGGGACTGTAGGCTACCTTGATCCTGAGTACTATGCAAATCAACAGCTGACAGAAAAGAGTGATGTTTACAGTTTTGGAATCGTCCTGCTTGAACTGATATCTGGAAGAAAGCCAGTTTCACCAGAAGATTATGGTGCTGAATGGAACATTGTTCATTGGGCAAGGTCATTAATTTGTAACGGAGATGTGATCAGTATAGTGGATCCATTTCTACTAGGAAATGTCAAAATTGAGTCCATTTGGAGGATTGCTGAGATTGCAATACTATGTGTAGAACAACATGGAACTTCCAGGCCTAAAATGCAGGAAATAATTTTAGCTATTCAAGATGCCATCAAGATTGAAAGGGGGAATGAAGGTGACCACAAAGCATGTTCTGGTAGTTCAAAAGGACAATCTTCGCGCAAAACATTACTAACAAACTTCCTTGACATCGAAAGCCCTGACTTATCAAATGATTGCCTAGTCCCTTCTGCAAGATAA 2793 0.4236 MGLFSHFLVSFLCLITTTLCQVTEFISIDCGGTSNYTDSRTGLQWISDTGAISYGKSVQVENPYGGWLQYQQRRDFPTESKYCYTLKTEERRRYLVRATFQYGSLESEGTYPKFQLYLDATKWATVTVLESARVYVKEMIIRAPSSSIDVCLCCATTGSPFISTLELRPLNLSMYATDFEDGFFLKVSARVNFGAPSEDPIRYPDDPYDRIWESDLVKRQNYLVGVAPGTERVNTSKQIDVRTREYPPVKVMQTAVVGTRGRLSYRLNLEDFPANARAYAFFAEIEELGVNETRKFRMERPYLPDYSNAVVNIAENANGSYSLYEPSYMNVTMDFVLSFSFVKTRDSTRGPLLSAIEISKYVQIAPKTDKGDVTVLNALCAMSTESAWSNEGRDPCVPAHWSWVACSPTTTPRITKITLSGKNLNGVIPSELKNMEGLTELWLDGNYLTGPIPDMSNLISLKIVHLENNRLTGPLPSYLGSLPSLQELHVQNNLLSGEIPPALLTGKVIFNYEGNSKLHKEAHKTHFKLILGASVGLLALLLVLCIGSLFLLCNTRRKESQSKSNDKGSSLRTSTKASTSYSIARGGNLMDEGVACYISLSDLEEATKNFAKQIGRGSFGPVYYGKMPDGKEIAVKIMADSSSHGTQQFVTEVALLSRIHHRNLVPLIGYCEDEHQHLLVYEYMHNGTLRNHIHDSTNQKCLDWLGRLYVAEDAAKGLEYLHTGCNPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYANQQLTEKSDVYSFGIVLLELISGRKPVSPEDYGAEWNIVHWARSLICNGDVISIVDPFLLGNVKIESIWRIAEIAILCVEQHGTSRPKMQEIILAIQDAIKIERGNEGDHKACSGSSKGQSSRKTLLTNFLDIESPDLSNDCLVPSAR* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1303 930 FunFam serine/threonine-protein kinase PBS1-like 580 683 - -
Vvi1g1303 930 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 409 504 - -
Vvi1g1303 930 PANTHER OS07G0107800 PROTEIN-RELATED 455 882 - -
Vvi1g1303 930 Pfam Malectin-like domain 28 360 IPR024788 -
Vvi1g1303 930 SUPERFAMILY L domain-like 398 503 - -
Vvi1g1303 930 Pfam Protein tyrosine and serine/threonine kinase 610 874 IPR001245 GO:0004672|GO:0006468
Vvi1g1303 930 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 684 890 - -
Vvi1g1303 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Vvi1g1303 930 Gene3D Transferase(Phosphotransferase) domain 1 684 898 - -
Vvi1g1303 930 SUPERFAMILY Protein kinase-like (PK-like) 595 875 IPR011009 -
Vvi1g1303 930 SMART serkin_6 608 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1303 930 Gene3D Ribonuclease Inhibitor 377 523 IPR032675 -
Vvi1g1303 930 ProSiteProfiles Protein kinase domain profile. 608 882 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g1303 930 Gene3D Phosphorylase Kinase; domain 1 571 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1303 Vvi-Chr1 19185519 19190522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1303 1 930 Receptor kinase-like Gene Family AT1G67720 69.132 0.0 1301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vvi1g1303 Malectin_like 5.2e-87 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1303 - - vvi:100240962 1835.46