Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1296 ATGATGAAAATTGATACCTGTTATACATTTAATATTTCTGTTTTCCCTTATCTATGTGGAAACCGACTGAAATGCAGGAATATTTTCAGGAGAGATTCATTGAAGGTGCATTTACAACAAAGATCCATTGGAAGAGATATTACTCCAGTCCTTGTGGAAACCTTTCTATCTGCGCAGCAACATTTGAAGACTATTGTCCTTGTGGCCAGTGCAGGATATGGCTCAGATCACATTACAGCAATTGATATTCTTAGAACAACAAGATCTGCAAATGGATTAGCTATTGGTGTTATTTTGAAGCCTTTTAGCTTCGAAGGAAAAAGGCGCCAAAATGAGGTCAAGAATTTGGTAGAGAGACTTCAGGAGCATACAAATTTTTGCATCGTGATTGACACTGACACACTACTCAAAAAGGATTTAGTAACCCTAGATGAGGCTCTGAAGACTGCAGATAATGGAGTTCTATTGGCCATAAATGCTATTTCTGTTCTCATATCTGGGATGCACAAAAAGCTTATTGATGCACCACATGATAATATGAAAGAACTCAAGGGTCCGGAAATTATAAAAATTTTAGAAAGCCACAAAGAAGCAAAAATCGGATTTGGGGCTGGCTACAACATTGAAACTTCAATTTTACAAGCTATATATGACTGCCCTTTCCTTAGTGTGTGTTTAAAGGATTTAAATGGCACAGTTATATGCATTCTTGCAAGTTCAGTCATCATCAACAACAGTGATGTGCTTTCCTTTTTGCATGTTTTCCGGAAAACTACAGAATGCACGAGAGAGATCATAATATCTATAATTCATGAGCCCAATCTTGAGCCCAACCTGATAGTGACAACAGTTATTATTTTAGGTTCTACTGGGCAACCGGCATCTCAAAAAAGCAGCATATTGTCCCAACTGGCCCAGCATTTCCCTTTTATTTTTAATCTTTTGGGAGGACACCATCTGCAACCAAATGGCACACAAGAAAGCCCTTCTATTGAAGGCCCAGGTCTTCCTAAGTTGATAAATGCACACGACTCTGGTGAAATGCAAACTGGAATTCCTATGGATGGCATTGCTGATGATATGGATATGTACTCTGAAGAACTCCAGATGTTGTTGGGCAGAAATGACCATGAAATCAATGCTTCAAGGGATAGTAATGGAAGATATGAACAAAGTGAGCTTGGATGCTCAGAGGCCACTATCGATTCCCTCAACTTTAATGATCAAAATACTGAAGGGATATCTGCTTTCCAAAGAGAGCCGCTTATTGGCTGGAACTTGGGACCAGGAGATCAGATTGCACAGGAGTGGGCTAAAGAAAGGGCAGCTGATTCTGGAGCTACTACAACGCTTGACAACCTAAGCATCTTCCACCTTCCAGTGGGTGTGAGACCTTTAGAAGAGTTGAATGACAGTCCAAATATCTCAAATACCACACAACACCCAGAGACAAAAATAGGGGATGAGATTAAGGCACAACCACTGGTTACTTCAAGGATGCCTTGGGATGAATTAACTGGTGCAGGTTTTGAAGCAGTAATGGATCTATACAATTCTGCATCTACAGTACTAAAGGGAAAATATGCAGATATTCCCAAAAAGCAAGGCATGCTTTCTGTTCGTGCTGCATCTATGCTGGAATCTGAACGAGATTCACAAAAAAAGTGGAGCCCCATTGTGCAAATGCAGTACAGAGGAGGAATCTACCAGGGGCGTTGCCAAGGGGGTCTTCCTGAAGGAAAGGGTCGTCTTTCACTTAGGGATGGAAGCATATATGATGGCATGTGGCGCTATGGTAAGAGATCAGGTCCAGGAACACTCTACTTCTGTAACGGGGATGTGTTCCAAGGATCATGGAGGGACGACGTTATGCATGGAAAGGGTTGGTTTTATTTTCACAGTGGAGATAGGTGGTTTGCAAACTTTTGGAAGGGAAAGGCAAATGGTGAAGGGCGCTTCTATTCAAAGTTTGGCGATGTCTTCTTCGGCCATTTTAAAGATGGATGGAGACATGGCCACTTCCTGTGTATCAATGTTAATGGAGAAAGGTGCGTTGAGGTTTGGGATGAAGGTGTCCTTGTAAGTCGCGAACAGCTGGACTCGGATACTGGCACTGGATGA 2121 0.4173 MMKIDTCYTFNISVFPYLCGNRLKCRNIFRRDSLKVHLQQRSIGRDITPVLVETFLSAQQHLKTIVLVASAGYGSDHITAIDILRTTRSANGLAIGVILKPFSFEGKRRQNEVKNLVERLQEHTNFCIVIDTDTLLKKDLVTLDEALKTADNGVLLAINAISVLISGMHKKLIDAPHDNMKELKGPEIIKILESHKEAKIGFGAGYNIETSILQAIYDCPFLSVCLKDLNGTVICILASSVIINNSDVLSFLHVFRKTTECTREIIISIIHEPNLEPNLIVTTVIILGSTGQPASQKSSILSQLAQHFPFIFNLLGGHHLQPNGTQESPSIEGPGLPKLINAHDSGEMQTGIPMDGIADDMDMYSEELQMLLGRNDHEINASRDSNGRYEQSELGCSEATIDSLNFNDQNTEGISAFQREPLIGWNLGPGDQIAQEWAKERAADSGATTTLDNLSIFHLPVGVRPLEELNDSPNISNTTQHPETKIGDEIKAQPLVTSRMPWDELTGAGFEAVMDLYNSASTVLKGKYADIPKKQGMLSVRAASMLESERDSQKKWSPIVQMQYRGGIYQGRCQGGLPEGKGRLSLRDGSIYDGMWRYGKRSGPGTLYFCNGDVFQGSWRDDVMHGKGWFYFHSGDRWFANFWKGKANGEGRFYSKFGDVFFGHFKDGWRHGHFLCINVNGERCVEVWDEGVLVSREQLDSDTGTG* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1296 706 SUPERFAMILY Tubulin nucleotide-binding domain-like 41 165 IPR036525 -
Vvi1g1296 706 SMART morn 567 588 IPR003409 -
Vvi1g1296 706 SMART morn 590 611 IPR003409 -
Vvi1g1296 706 SMART morn 659 680 IPR003409 -
Vvi1g1296 706 SMART morn 613 634 IPR003409 -
Vvi1g1296 706 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 31 700 - -
Vvi1g1296 706 Gene3D Tubulin/FtsZ, GTPase domain 35 288 IPR036525 -
Vvi1g1296 706 PRINTS Cell division protein FtsZ signature 92 113 IPR003008 GO:0005525
Vvi1g1296 706 PRINTS Cell division protein FtsZ signature 186 207 IPR003008 GO:0005525
Vvi1g1296 706 Gene3D - 571 620 - -
Vvi1g1296 706 Gene3D - 621 703 - -
Vvi1g1296 706 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 566 694 - -
Vvi1g1296 706 Pfam MORN repeat 615 637 IPR003409 -
Vvi1g1296 706 Pfam MORN repeat 592 614 IPR003409 -
Vvi1g1296 706 Pfam MORN repeat 569 590 IPR003409 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1296 4 701 PP2C-type Phosphatase Gene Family AT1G75010 48.857 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1296 - - vvi:100264763 1373.99