Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1292 ATGGCCGCTTCTTCAACGCCTGCGCAGTTGTTTGGAATCAGAGAGGAGGAGCAGAATCAGGTGAAACAACAACATTCCGCCGTGCCATCCTCATCGAACGCCCCAGCTGCAGCCCCCCCGAAGAAGAAGAGAAATCAACCTGGAACTCCAAATCCAGATGCAGAGGTCATTGCACTCTCTCCAAAGACCCTAATGGCCACAAATAGATTTATATGTGAGGTGTGTAACAAGGGGTTCCAAAGGGAGCAAAACTTACAGCTCCACAGAAGAGGACACAACCTACCCTGGAAGCTTAAGCAGAAGACAACAAAAGAAGTGAGAAGGAAGGTGTATTTGTGTCCGGAACCTGGTTGCGTTCACCATGACCCGGCTCGGGCTCTTGGCGACCTCACTGGTATAAAGAAGCACTACTCAAGGAAGCATGGAGAAAAGAAATGGAAGTGTGAGAAGTGCTCTAAGAGGTATGCCGTTCAATCAGATTGGAAAGCCCATTCCAAGACCTGTGGCACGAGAGAATACAGATGTGATTGTGGTACCCTCTTCTCAAGGCGTGACAGCTTCATTACTCACAGGGCCTTCTGCGATGCGCTCGCGCAGGAAAGTGCAAGACATCCGACGCCAATGAGCACAATTGGCAGTCATCTCTATGGAAGTAGTAACATGGGGTTAGGCTTGTCTCAGGTGGGTCCCCAAATTTCATCCATGCCAGATCAGAGCCACCAACCTGGTGACATGCTTCGACTTGGAGGTGCCCGGGCTGGGCAATTCGACCATCTGATTCCACCTGCGATTGGTTCGTCATCCTTCCGAACGCCGCAGCCCATGCCTTCTCAAGCCTTCTACATTCCTGAGCCAAACCAGGAATTTCATGAAGACCAGCAATCTCAACATGGGGGGTTGTTGACGAACAAGCCATTCCATGGACTGGTTCATCTTCCTGATCTGCAAAACAACACAAACAACCCTTCTTCTGCTGCTAATCTGTTCAATCTCAGCTTCTTTTCCAACAGCAGCAATACCAACAGCATGCTCAGTAACACCAACAATGCCAATAACAGCACTAATATGCCATCTTCAGGGTTGTTGATTTCTGACCAGTTCAACACTGTAAATGGAGGTAGTGGTAGCGAAAGGAATAATCTCTTCCCAAGTAACATAATCGGGGATCAAATCAGCTCTGGGGTCCCTTCTCTCTTCAGCACATCTCTCCAAAATGAAAATGCAGTTTCGCATATGTCTGCAACTGCATTGCTTCAGAAAGCGGCACAAATGGGATCGACCTCGAGCAACAACAGTGCCTCCTTGCTCCGAGGCTTTGCAGGTTCTTCCTCCGCCAACGCAAAATCTGATAGGCCTCTTGTTGGCCCCAACTTCGGGGGTGTTTTTGGGGAAAACGAAAGCCACCTTCAGGACCTGATGAATTCTCTTGGTGGTGGGAGCTCGTCCATCTTTGGTGGTGGGTCTGGAGGGGTGAATGCATATAGTGGACATGAGAATGAGAACACCTATGGAGGATTCAATGCAAATAGGTCTACTCTGGAACAACAACAGCAACAGCAGCAGCAGCATCGCCATGGCCCAAACTTTTGCAACATAGATGAAATCAAGCTCCACCAGAATCTGACTGCTAATATGGGGGGCTCTGATAGACTAACCAGAGATTTTCTAGGGGTGGGGCAGATGGTTAGAACCATCAGTGGAGGATTTTCACAGAGAGACCTACCACCTCCTGGTATTAATATCAGCACCTTGGATTCAGAGAGAAGCAGTGCACAGACAAGCCAAGCTTTTGGTGGTGGGAATTTTCAGTGA 1812 0.489 MAASSTPAQLFGIREEEQNQVKQQHSAVPSSSNAPAAAPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEVRRKVYLCPEPGCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTPMSTIGSHLYGSSNMGLGLSQVGPQISSMPDQSHQPGDMLRLGGARAGQFDHLIPPAIGSSSFRTPQPMPSQAFYIPEPNQEFHEDQQSQHGGLLTNKPFHGLVHLPDLQNNTNNPSSAANLFNLSFFSNSSNTNSMLSNTNNANNSTNMPSSGLLISDQFNTVNGGSGSERNNLFPSNIIGDQISSGVPSLFSTSLQNENAVSHMSATALLQKAAQMGSTSSNNSASLLRGFAGSSSANAKSDRPLVGPNFGGVFGENESHLQDLMNSLGGGSSSIFGGGSGGVNAYSGHENENTYGGFNANRSTLEQQQQQQQQHRHGPNFCNIDEIKLHQNLTANMGGSDRLTRDFLGVGQMVRTISGGFSQRDLPPPGINISTLDSERSSAQTSQAFGGGNFQ* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1292 603 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 568 IPR031140 -
Vvi1g1292 603 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Vvi1g1292 603 MobiDBLite consensus disorder prediction 584 603 - -
Vvi1g1292 603 MobiDBLite consensus disorder prediction 1 54 - -
Vvi1g1292 603 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vvi1g1292 603 Gene3D Classic Zinc Finger 125 203 - -
Vvi1g1292 603 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Vvi1g1292 603 SMART c2h2final6 111 141 IPR013087 -
Vvi1g1292 603 SMART c2h2final6 70 92 IPR013087 -
Vvi1g1292 603 SMART c2h2final6 146 166 IPR013087 -
Vvi1g1292 603 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Vvi1g1292 603 FunFam protein indeterminate-domain 12-like 49 117 - -
Vvi1g1292 603 MobiDBLite consensus disorder prediction 1 33 - -
Vvi1g1292 603 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vvi1g1292 603 Gene3D Classic Zinc Finger 49 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1292 Vvi-Chr1 19044379 19047780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1292 41 567 IDZ Gene Family AT2G02070 51.625 1.94e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g1292 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1292 K25870 - vvi:100251079 1130.93