Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1291 ATGGCCGCCCCTTCCTCATCGGCGCCTTTTTTCGGAACGAGGGAAGAAGAACAAACCCAAATGATACAACAACAATCCTCCACACCCACTTCCTCCACAGCTCCAACTGCAGCAGCACCTCAAAAGCGAAAGAGAAATCTTCCAGGAACACCAAATCCAGATGCGGAGGTGATTGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTCATTTGTGAGGTATGCAACAAAGGGTTTCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAACTAAGGCAGAAGACTACAAAAGAAGTGAGGAGGAAGGTGTACCTATGCCCCGAGCCCACATGCGTCCACCATGATCCTTCTCGAGCTCTTGGCGACCTCACTGGCATCAAAAAGCACTATTCTAGAAAACACGGCGAGAAGAAATGGAAGTGCGATAAGTGCTCCAAGCGATACGCCGTGCAATCCGATTGGAAAGCCCATTCCAAGACCTGTGGTACTAGGGAATATCGATGCGATTGTGGCACTCTCTTCTCAAGGCGCGATAGTTTCATCACTCACCGGGCATTCTGCGATGCACTGGCTCAGGAGAGTGCGAGGAATCCTCCCAGCTTGACCAACATGGGTGGCCATTTATATGGAACCAGCCAAATGACCTTGGGCCTATCTCAAGTGGGTTCCCAGATTGCTTCGCTCCATGATCAGAACCATCCATCCAGTAACATTTTACGCCTGGACAGTGCCGGAGCAGCAAAATATGAACACCTCCTTCCTCCATCTAACCCTTCATTTGGAAAGCCCCCGCAGCCAATGCCTTCGTCGGCATTCTATATGCCAGATTCAAACCAAGGCTATCAAGAACACCAATCTCATCATACTTTATTGGGGAATAAACCATTTCACGGGCTGATGCAATTCCCGGATCATCAAGGCAATGCCAACAACTCTCCTTCTGCTGCTGCCAATCTCTTTAACCTTGGTTTCTTTCCGAATAATAGTACCAGTAGCAGTATTAGTAATAGCAACAATGCCAACAATTCAACCACGCTTCCGCCCTCAGGGTTCTTAAGTCCGGATCAGTTTAACAATGGGAACGCCAGTGGCCAAGGAACAACGCTGTTCTCCAGTAGCATGAGTGATCACGTCGGTTCGGGTCTATCTTCTCTCTATAGCACTTCGATGCAACAGGAAAGCCTTGCCCCACATATGTCTGCAACTGCATTGCTCCAAAAGGCTGCTCAAATGGGTCCAACTACAAGCAGTAATAGCTCCTCATTGCTAAGAGGCTTGGGCGGCTCTTCATCAACCGGCGCTAAGTCTGATAGGCAACTCCTCTCTTCCAACTTCAGCAGCCTAAGGTCACAGATGGAAAACGAAAATCATCTCCAAGGATTAATGAATTCACTTGCAAACGGAAACTCTTCCATCTTTGGAGGATCGGGCCATGCACAAGAAAATAACTTTGGTGGCTTTAATGGGAGAGGGATCACATTGGAACAGCAGCACAAGAACACCAACTTCTCCAAGGTTGATGATGCTAAGTTGCATCAAAGTCTTGGTGTCAGCATGGGGGGACCTGATAGATTAACACTCGATTTTCTGGGTGTGGGAGGGGTGGTAAGAAACGTGGGTGGTGGGTTCTCGCAGAGAGAACAGCGACACGTTGTCGAAATGAGCTCTTTGGACTCTGAAATAAAGACTGCGGCAGCAGCGCAGGGAAGTCGGCCATTTGGAGGTTCAAAACTGCAGTGA 1764 0.487 MAAPSSSAPFFGTREEEQTQMIQQQSSTPTSSTAPTAAAPQKRKRNLPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLRQKTTKEVRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPPSLTNMGGHLYGTSQMTLGLSQVGSQIASLHDQNHPSSNILRLDSAGAAKYEHLLPPSNPSFGKPPQPMPSSAFYMPDSNQGYQEHQSHHTLLGNKPFHGLMQFPDHQGNANNSPSAAANLFNLGFFPNNSTSSSISNSNNANNSTTLPPSGFLSPDQFNNGNASGQGTTLFSSSMSDHVGSGLSSLYSTSMQQESLAPHMSATALLQKAAQMGPTTSSNSSSLLRGLGGSSSTGAKSDRQLLSSNFSSLRSQMENENHLQGLMNSLANGNSSIFGGSGHAQENNFGGFNGRGITLEQQHKNTNFSKVDDAKLHQSLGVSMGGPDRLTLDFLGVGGVVRNVGGGFSQREQRHVVEMSSLDSEIKTAAAAQGSRPFGGSKLQ* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1291 587 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vvi1g1291 587 SMART c2h2final6 147 167 IPR013087 -
Vvi1g1291 587 SMART c2h2final6 112 142 IPR013087 -
Vvi1g1291 587 SMART c2h2final6 71 93 IPR013087 -
Vvi1g1291 587 FunFam protein indeterminate-domain 12-like 50 118 - -
Vvi1g1291 587 MobiDBLite consensus disorder prediction 339 382 - -
Vvi1g1291 587 Gene3D Classic Zinc Finger 51 117 - -
Vvi1g1291 587 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 558 IPR031140 -
Vvi1g1291 587 Gene3D Classic Zinc Finger 125 204 - -
Vvi1g1291 587 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vvi1g1291 587 MobiDBLite consensus disorder prediction 415 447 - -
Vvi1g1291 587 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Vvi1g1291 587 MobiDBLite consensus disorder prediction 11 39 - -
Vvi1g1291 587 MobiDBLite consensus disorder prediction 1 55 - -
Vvi1g1291 587 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vvi1g1291 587 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1291 Vvi-Chr1 19016601 19020259 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1291 10 549 IDZ Gene Family AT2G02070 45.408 5.42e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g1291 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1291 K25870 - vvi:100257993 1104.35