Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1290 ATGTTGATACAGGATGATATTGATGTGGCTTGTGGGGCAGAGGATTCTGATTTTCAGCCTGTTCTCAAACCATACCAACTCGTTGGAGTCAACTTTCTTCTCCTGTTGTATCGGAAGGGTATAGGAGGAGCCATCTTGGCAGATGAGATGGGTCTCGGTAAAACCATTCAGGCTATAACATATTTAACCTTGTTGAAACACATGGACAATGACCCTGGTCCCCATTTAGTTGTGTGTCCTGCTTCTGTTCTCGAAAACTGGGAAAGAGAGCTTAAAAAGTGGTGCCCATCATTCACTGTGATCCAATATCATGGGGCTGGGCGAACGCATTATTCAAAAGAGTTGAACTCTTTGTCAAAAGCGGGATTACCCCCTCCATTTAATGTACTTCTTGTGTGTTACTCGCTTTTTGAACGACACAGTCAACAGCAGAAAGATGACCGTAAACTTCTAAAACGTTGGCAATGGAGCTGCGTGCTCATGGATGAGGCCCATGCTTTGAAGGATAAGAACAGCTATAGGTGGAAAAACCTGATGTCCGTTGCACGAAATGCAAACCAGCGTCTGATGTTGACGGGGACACCACTCCAAAATGATTTGCATGAGCTTTGGTCATTATTGGAGTTTATGATGCCTGATCTTTTTACAACTGGAGATGTGGACTTGAAGAAGTTATTAAATGCAGAAGATAGAGATTTGATTGCTCGTATGAAGTCCATTCTTGGACCATTTATTTTGAGGCGTTTAAAGTCTGATGTAATGCAGCAACTTGTCCCAAAGATACAGCGGGTTGAGTATGTGTACATGGAAAAGAACCAGGAGGATGCTTATAAAGAAGCCATTGAGGAGTACCGTGCAGCTTCACGGGCTCGAATTGCAAAAATTTCTGATGTCAACCGCAACAGTGTTGTTAGAGTTCTTCCTCGGCGTCAGATTTCAAATTATTTTGTTCAGTTCCGAAAGATTGCAAATCATCCTTTACTGGTGAGGCGTATTTACAATGATGAGGATATTGTTCGTTTTGCAAAAAGGTTATATCCGATGGGTGTGTTTGGTTTTGAATGTAACTTGGACAGAGTAATCGAAGAGCTTAAGAGTTACAATGACTTCTCTATTCACCGGCTTTTACTCTATTATGATGTCGCGGATAAAAAGGGCATCCTTCCGGACAAACATGTCATGGTTTCAGCAAAATGTCGGGAATTAGCAGAACTTCTCCCCACACTCAAACAAGGTGGGCACCGGGTTCTAATATTTAGCCAGTGGACATCAATGCTTGACATTCTGGAGTGGACTTTGGATGTAATTGGAGTGACATATAGACGACTTGATGGGAGCACACAGGTGACAGACAGACAGACAATTGTGGACACATTCAATAATGATACTTCTATATTTGCCTGCTTGCTGTCCACAAGAGCTGGAGGGCAGGGTCTGAACTTGACTGGAGCTGATACAGTTGTCATCCATGACATGGATTTCAACCCACAGATTGACCGTCAAGCTGAAGATCGATGTCATCGCATCGGCCAAACGAAACCTGTTACTATATACAGGTTGGTGACCAAAGATACAGTGGATGAGAATGTTTATGAGATTGCAAAGCGGAAGCTAATCTTGGATGCTGCAGTGCTCGAGTCAGGTGTGGAGGTGGATGATGAAGCTGGCATGTCTGAAAAGACTATGGGAGAGATATTATCGGCACTTTTGCTTGGTTAG 1719 0.4322 MLIQDDIDVACGAEDSDFQPVLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLKHMDNDPGPHLVVCPASVLENWERELKKWCPSFTVIQYHGAGRTHYSKELNSLSKAGLPPPFNVLLVCYSLFERHSQQQKDDRKLLKRWQWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFTTGDVDLKKLLNAEDRDLIARMKSILGPFILRRLKSDVMQQLVPKIQRVEYVYMEKNQEDAYKEAIEEYRAASRARIAKISDVNRNSVVRVLPRRQISNYFVQFRKIANHPLLVRRIYNDEDIVRFAKRLYPMGVFGFECNLDRVIEELKSYNDFSIHRLLLYYDVADKKGILPDKHVMVSAKCRELAELLPTLKQGGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKDTVDENVYEIAKRKLILDAAVLESGVEVDDEAGMSEKTMGEILSALLLG* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1290 572 Coils Coil 270 290 - -
Vvi1g1290 572 Gene3D - 5 240 IPR038718 -
Vvi1g1290 572 SMART ultradead3 18 223 IPR014001 -
Vvi1g1290 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 248 IPR027417 -
Vvi1g1290 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 563 IPR001650 -
Vvi1g1290 572 CDD SF2_C_SNF 388 521 - -
Vvi1g1290 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 213 IPR014001 -
Vvi1g1290 572 Gene3D - 259 570 IPR027417 -
Vvi1g1290 572 FunFam Protein CHROMATIN REMODELING 19 isoform A 1 271 - -
Vvi1g1290 572 SMART helicmild6 427 510 IPR001650 -
Vvi1g1290 572 PANTHER SNF2/RAD54 HELICASE FAMILY 21 550 - -
Vvi1g1290 572 Pfam Helicase conserved C-terminal domain 398 510 IPR001650 -
Vvi1g1290 572 Pfam SNF2-related domain 42 328 IPR000330 GO:0005524|GO:0140658
Vvi1g1290 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 551 IPR027417 -
Vvi1g1290 572 CDD DEXHc_Snf 22 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1290 Vvi-Chr1 18956261 18986588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1290 43 537 RAD5 or RAD16-like Gene Family AT5G22750 26.601 2.49e-46 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi1g1290 SNF2_N 1.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1290 K14439 - vvi:100252853 1135.94