Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1289 ATGGCAGAAGAATGCACTGATAGCTCTGTTGCAACCTCTTCTTCTGCACCCAACTGGTGGGATCTCCATGGAAGCTCTACTCTTTCTTCATGTTATAATAGCACAAACCCTTGGAGCCAACCAAACCCTAACTCCAACTCTTCTTGTGAAGAGGAGGTTTCAATCTCCACATCCTTTACCAATGCTTCCAATCACTCTGGCCTTACTGTTGAGTCGTCCCGCCGCCTCATTGAGCCTGCTTCTTCCACCAACGAGTTAATTGGTGAACCTGCAGCCTCGGATAGTCATCTTTGGAGCCATGTTCTATTAAATGTTGGAAGCAATGGAGATTTGCATGGTAGTCAAGATGTTGGAGAGAACTTACTTGATGCACTCTCATCAAAGAGTTTATCAACTGGAATTTTTGAACCTGCCTGTGACTACTTGAAGAAAATGGATAACAGTTGGGAATTCACCAACTCCACATCTTTCAGTAATTTCGATAAGCATTTTAATGGGTTCAGCGAGAACTTCATTGGAAGTGAAAGGCTAACCAAGTTATCTGATTTGGTTAGCAACTGGTCTATTGCCCCTCCAGACCCAGAAGTTAACCATCAGTTCGACCCACAAATTTGCAATATGTCTTTGAGTTCACCAATGGACATTCAGTACTCACAGCCTGATCTCTGTCACATGAAACTGACATTCAATGAATCAGCATCATGTGGCATGGGAGCAAGCAGAAATTCCGGGTTGTTATCATGTTACCGTCATGATCAAAAAGTGGAGAACGATCATCATGAGATTGGATCATCCCCTGGGCCATTACTCCGCAGGCCATGTCAAAGTAATGGCATTGGATATCAATTTGGCCTTAACGGCTCGATAGTAGGAGACAACGGCAAATACTATTATGGAATCCCCAATACAACATGCAGTAACCCAAGAAATTTTGCAGATGTCATATCATTTAGCAGTAGATTATGCAAGCCTTTGGTGGATAGTCGCGAGTCTAAACCCTGTTTAAAACCGTTGAGTTTATCTGATTGTAAGAAGCAAGGACTCCAAACTTCTTCCCAAGCAAGAAATAATGCAAGAGGACAGGGGATTAGCAATGAAGGAAAGAAGAAAAGGTCTGATCAAGACACTTCAGAGGCTCAGACAGTCATGAAAAAACCTAAGCAGGAGAGCTCTGCGGTTTCTTCTGTAAAGATGCAGGCCCCGAAAGTCAAGATTGGAGATAGGATCACAGCTCTTCAGCAAATTGTGTCGCCTTTTGGAAAGACCGATACCGCATCTGTGCTATATGAAGCAATTGGATACATAAAATTTCTGCAAGAGCAAGTGCAGTTACTGAGTAATCCTTACATGAAGACTAATAAGGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAGTTTATCACGAGAACACAGGATCAGACTACTGGCCAACTACATATAGAGGGTGTTTGTATAGATGA 1527 0.427 MAEECTDSSVATSSSAPNWWDLHGSSTLSSCYNSTNPWSQPNPNSNSSCEEEVSISTSFTNASNHSGLTVESSRRLIEPASSTNELIGEPAASDSHLWSHVLLNVGSNGDLHGSQDVGENLLDALSSKSLSTGIFEPACDYLKKMDNSWEFTNSTSFSNFDKHFNGFSENFIGSERLTKLSDLVSNWSIAPPDPEVNHQFDPQICNMSLSSPMDIQYSQPDLCHMKLTFNESASCGMGASRNSGLLSCYRHDQKVENDHHEIGSSPGPLLRRPCQSNGIGYQFGLNGSIVGDNGKYYYGIPNTTCSNPRNFADVISFSSRLCKPLVDSRESKPCLKPLSLSDCKKQGLQTSSQARNNARGQGISNEGKKKRSDQDTSEAQTVMKKPKQESSAVSSVKMQAPKVKIGDRITALQQIVSPFGKTDTASVLYEAIGYIKFLQEQVQLLSNPYMKTNKDPWGGLDRKDKGDLKLDLKSRGLCLVPISCTPQVYHENTGSDYWPTTYRGCLYR* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1289 508 CDD bHLH_AtbHLH_like 404 446 IPR045239 -
Vvi1g1289 508 MobiDBLite consensus disorder prediction 346 363 - -
Vvi1g1289 508 MobiDBLite consensus disorder prediction 383 397 - -
Vvi1g1289 508 Gene3D - 401 455 IPR036638 GO:0046983
Vvi1g1289 508 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 153 488 - -
Vvi1g1289 508 MobiDBLite consensus disorder prediction 364 382 - -
Vvi1g1289 508 MobiDBLite consensus disorder prediction 346 397 - -
Vvi1g1289 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 404 453 IPR036638 GO:0046983
Vvi1g1289 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 438 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1289 Vvi-Chr1 18906768 18909678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1289 1 508 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 34.156 1.21e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1289 - - vvi:100240845 990.719