Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1285 ATGAAGGGCTCTCAACAGATGGGCCCGATGGTGGCTGAGGCTAGGACCTGTGAGAGTCAGAGCCACCGGTTCAAGGGAACGTGTGTCAGGCAGAGCAACTGTGCTGCTGTTTGCCAGACCGAGGGTTTCCATGGAGGAAATTGCCGTGGCTTTCGTCGTCGATGCTTCTGCACTAAGCATTGTTAA 186 0.5484 MKGSQQMGPMVAEARTCESQSHRFKGTCVRQSNCAAVCQTEGFHGGNCRGFRRRCFCTKHC* 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1285 61 ProSitePatterns Gamma-thionins family signature. 15 38 IPR008176 GO:0006952
Vvi1g1285 61 Gene3D - 15 61 IPR036574 -
Vvi1g1285 61 PRINTS Purothionin signature 46 60 IPR008176 GO:0006952
Vvi1g1285 61 PRINTS Purothionin signature 16 31 IPR008176 GO:0006952
Vvi1g1285 61 PANTHER DEFENSIN-LIKE PROTEIN 1 11 61 - -
Vvi1g1285 61 Pfam Gamma-thionin family 15 61 - -
Vvi1g1285 61 SUPERFAMILY Scorpion toxin-like 15 61 IPR036574 -
Vvi1g1285 61 SMART gth_4 16 61 IPR003614 GO:0006952
Vvi1g1285 61 CDD Knot1 26 58 IPR003614 GO:0006952
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1285 7 61 Plant Defensins Gene Families AT2G02100 81.818 3.86e-29 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1285 - - vri:117911168 114.39