Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1279 ATGCCATGTGAAGCTCAACTTTCTTCGTCATTCTATGATAATGCCTGTCCAAGTGCACTCAGTACCATCCGGACAGCCATAAGGACTGCGGTATCCCGCGAGCGTAGAATGGCAGCATCTCTGATTCGTCTCCATTTCCATGACTGCTTTGTTCAGGGCTGTGATGCATCAATCTTGCTTGATGATTCCCCCACCATTCAAAGTGAGAAAAATGCACCTAACAATAACAATTCAGTTAGAGGGTTCGAAGTCATAGACAATGTCAAGTCTCAGGTGGAGAACATTTGTCCAGGCGTTGTATCCTGTGCAGACATTCTTGCAGTGGCAGCACGAGATGCATCTGTTGCAGTTGGGGGGCCAACATGGACACTGAAGCTTGGAAGAAGAGACTCCACCACTTCAGGCCTCAGCCAAGCTGCAACTAACCTTCCAACCTTTAGAGACGGCCTGGACAGGCTTACTTCCTTGTTCAGTAGCAAAGGTTTAAGTACAAGAGACATGGTTGCTCTTTCAGGTTCCCATACAATAGGCCAAGCAAGATGCGTGACCTTCCGCGATAGAATATACGGCAATGGAACTAACATTGATGCTGGCTTTGCTAGCACTCGGAGGCGCCGGTGTCCTGCTGATAATGGGAATGGTGATGATAATCTTGCACCCCTGGATTTGGTGACACCCAATTCTTTCGATAACAATTACTTCAAGAATCTCATTCAAAGAAAAGGCCTCCTTCAATCAGACCAGGTACTTTTTAACGGAGGATCTACCGATAGTATTGTCACGGAGTATAGCAAGAGCCCTTCAACTTTCAGCTCTGATTTTTCATCTGCCATGGTAAAAATGGGAGATATCGAACCTCTCATTGGCTCTGCTGGAGTGATAAGAAAATTCTGCAACGTTATAAACTAA 909 0.4587 MPCEAQLSSSFYDNACPSALSTIRTAIRTAVSRERRMAASLIRLHFHDCFVQGCDASILLDDSPTIQSEKNAPNNNNSVRGFEVIDNVKSQVENICPGVVSCADILAVAARDASVAVGGPTWTLKLGRRDSTTSGLSQAATNLPTFRDGLDRLTSLFSSKGLSTRDMVALSGSHTIGQARCVTFRDRIYGNGTNIDAGFASTRRRRCPADNGNGDDNLAPLDLVTPNSFDNNYFKNLIQRKGLLQSDQVLFNGGSTDSIVTEYSKSPSTFSSDFSSAMVKMGDIEPLIGSAGVIRKFCNVIN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1279 302 CDD secretory_peroxidase 6 301 IPR033905 GO:0004601|GO:0042744
Vvi1g1279 302 SUPERFAMILY Heme-dependent peroxidases 6 302 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 FunFam Peroxidase 10 150 - -
Vvi1g1279 302 FunFam Peroxidase 144 281 - -
Vvi1g1279 302 Pfam Peroxidase 24 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 Gene3D Peroxidase, domain 2 144 281 - -
Vvi1g1279 302 PANTHER PEROXIDASE 72-RELATED 5 300 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 ProSiteProfiles Plant heme peroxidase family profile. 6 302 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 Gene3D - 10 302 - -
Vvi1g1279 302 ProSitePatterns Peroxidases active site signature. 38 49 IPR019794 GO:0004601
Vvi1g1279 302 PRINTS Haem peroxidase superfamily signature 166 181 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Haem peroxidase superfamily signature 222 237 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Haem peroxidase superfamily signature 100 117 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Haem peroxidase superfamily signature 118 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Haem peroxidase superfamily signature 38 52 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 40 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 220 235 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 236 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 118 133 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 165 177 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 16 35 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 99 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 80 93 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 PRINTS Plant peroxidase signature 276 289 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1279 302 ProSitePatterns Peroxidases proximal heme-ligand signature. 166 176 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1279 Vvi-Chr1 18632719 18633953 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1279 3 302 Peroxidase AT1G14550 66.225 8.99e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1279 K00430 - vvi:100247600 592.038