Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1278 ATGGGTTTAACAAGTTGGCCCTCCTGCATTTCTCCTGCCTGCATTTTTCTTGCTGTGTTCCTCATTCTCTCAAACATGCCTTGTGAAGCTCAGCTATCTCCAACATTCTATGATGATACCTGTCCAACAGCACTCACCACCATCCGGACAGCTGTCAGAACAGCGGTGTCACGTGAGCGTAGAATGGCAGCATCGCTGATTCGTCTCCACTTCCACGATTGCTTTGTTCAGGGCTGTGATGCATCAATCTTGCTTGACGATTCCTCCTCCATTCAAAGCGAGAAGAATGCACCTAATAATTTGAATTCAGTTAGAGGGTATGAAGTCATAGATAATATCAAGTCCAAGGTGGAGAGCATTTGTCCAGGCGTTGTATCTTGTGCAGACATTGTTGCAGTCGCAGCCCGAGATGCATCTGTTGCTGTTAGTGGCCCAACATGGACAGTGAAGCTTGGAAGAAGAGACTCCACCACTTCAGGCCTCAGCCTAGCTGCAACCAACCTACCAAGCTTTAGGGACAGCCTCGACAAGCTTGTTTCCTTGTTCGGCAGCAAAGGTTTGAGTGCAAGAGACATGGTGGCCCTTTCTGGTTCTCATACAATTGGTCAAGCTAGATGCGTGACATTCCGGGATAGGGTATACAATGGAACTGACATTGACGCTGGCTTTGCCAGTACCAGGAGACGCCGTTGTCCTGCTGATAATGGGAATGGTGATGCCAATCTTGCACCCCTTGAGTTGGTGACACCCAATTCTTTTGATAACAATTACTTCAAGAATCTCATTCAAAGGAAAGGCCTTCTTCAATCCGACCAAGTACTTTTTAGTGGAGGATCCACCGACACTATTGTCAATGAATACAGCAAGAGCCCAAAAACTTTCAGGTCTGACTTTGCATCTGCCATGGTAAAGATGGGAGATATCGAACCTCTTACTGGATCTGCTGGAGTGATACGGAAATTCTGCAACGTCATAAACTAA 981 0.4669 MGLTSWPSCISPACIFLAVFLILSNMPCEAQLSPTFYDDTCPTALTTIRTAVRTAVSRERRMAASLIRLHFHDCFVQGCDASILLDDSSSIQSEKNAPNNLNSVRGYEVIDNIKSKVESICPGVVSCADIVAVAARDASVAVSGPTWTVKLGRRDSTTSGLSLAATNLPSFRDSLDKLVSLFGSKGLSARDMVALSGSHTIGQARCVTFRDRVYNGTDIDAGFASTRRRRCPADNGNGDANLAPLELVTPNSFDNNYFKNLIQRKGLLQSDQVLFSGGSTDTIVNEYSKSPKTFRSDFASAMVKMGDIEPLTGSAGVIRKFCNVIN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1278 326 ProSitePatterns Peroxidases active site signature. 63 74 IPR019794 GO:0004601
Vvi1g1278 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
Vvi1g1278 326 PANTHER PEROXIDASE 72-RELATED 29 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 ProSiteProfiles Plant heme peroxidase family profile. 31 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 CDD secretory_peroxidase 31 325 IPR033905 GO:0004601|GO:0042744
Vvi1g1278 326 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 Gene3D Peroxidase, domain 2 169 305 - -
Vvi1g1278 326 FunFam Peroxidase 169 305 - -
Vvi1g1278 326 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 FunFam Peroxidase 35 177 - -
Vvi1g1278 326 SUPERFAMILY Heme-dependent peroxidases 31 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 Pfam Peroxidase 49 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1278 326 Gene3D - 35 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1278 Vvi-Chr1 18621130 18622440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1278 15 326 Peroxidase AT1G14550 65.079 2.53e-151 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1278 K00430 - vvi:100264755 625.55