Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1277 ATGGTGGCGCTTTCTGGTTCTCATACAATTGGCCAAGGAAGATGCGTGACATTCCGGGATAGGATATACAATGGAACTGACATTGACGCTGGCTTTGCCAGTACCCGGAGACGCCGCTGTCCTGCTGATAATGGGAATGGTGATGCCAATCTTGCACCTCTTGAGTTGGTGACGCCCAATTCTTTTGATAACAATTACTTCAAAAATCTCATTCAAAGGAAAGGTCTTCTTCAATCCGACCAAGTGCTTTTTAGTGGAGGATCCACCGACTCTATTGTCAATGAATACAGCAAGAGCCCAAAAACTTTCAGGTCTGACTTTGCATCTGCCATGCTGAAGATGGGAGATATTGAACCTCTCACCAGATCTGCTGGAGTGATACGAAAATTCTACAATGTCATAAACTAA 408 0.4436 MVALSGSHTIGQGRCVTFRDRIYNGTDIDAGFASTRRRRCPADNGNGDANLAPLELVTPNSFDNNYFKNLIQRKGLLQSDQVLFSGGSTDSIVNEYSKSPKTFRSDFASAMLKMGDIEPLTRSAGVIRKFYNVIN* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1277 135 Gene3D - 115 129 - -
Vvi1g1277 135 PANTHER PEROXIDASE 72-RELATED 1 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 SUPERFAMILY Heme-dependent peroxidases 1 135 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 PRINTS Plant peroxidase signature 69 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 PRINTS Plant peroxidase signature 109 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 PRINTS Plant peroxidase signature 53 68 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 FunFam Peroxidase 1 114 - -
Vvi1g1277 135 Pfam Peroxidase 1 99 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1277 135 Gene3D Peroxidase, domain 2 1 114 - -
Vvi1g1277 135 ProSiteProfiles Plant heme peroxidase family profile. 1 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1277 Vvi-Chr1 18615087 18615621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1277 1 129 Peroxidase AT5G05340 67.442 5.11e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1277 K00430 - vvi:100259578 273.478