LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1275	ATGGCTGATAAGCAGGATCTCTTGCTGCCTATTGCCAACGTGGGTCGGATCATGAAGCAAATCCTACCACCGGGGGCCAAGGTTTCCAAAGAAGCCAAAGAAACAGTGCAAGAATGTGTATCTGAATTTGTAAAGTTCGTTACTGGTGAAGCATCTGCCAAGTGTAGAAAGGAGGACCGACAGACGGTGACTGTAGATGACATTTGTTGGGCACTGAGTGCTCTGGGACTTGATGACTATGCTGGGGCTACGGTTAGGTATTTACACAAATACAGGGAGTTTGAAAGAGAAAGAGTCAATCAAAAGGTCCAAAACGAAGTCCACAGCACTCGAGCCAAATCTGGAGCATCAAACTATAAATGTATCCAAGCAGGGAAACAGACCGAAACCCCCACTCCGCTATTATTGTTCAAAGTTACTGATCAAAATGGTAGTAGCTCTCTTACAAAGCTATCTTGA	459	0.4488	MADKQDLLLPIANVGRIMKQILPPGAKVSKEAKETVQECVSEFVKFVTGEASAKCRKEDRQTVTVDDICWALSALGLDDYAGATVRYLHKYREFERERVNQKVQNEVHSTRAKSGASNYKCIQAGKQTETPTPLLLFKVTDQNGSSSLTKLS*	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1275	152	PRINTS	CCAAT-binding transcription factor subunit A signature	74	92	-	-
	Vvi1g1275	152	PRINTS	CCAAT-binding transcription factor subunit A signature	36	54	-	-
	Vvi1g1275	152	PRINTS	CCAAT-binding transcription factor subunit A signature	55	73	-	-
	Vvi1g1275	152	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	3	116	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Vvi1g1275	152	Gene3D	Histone, subunit A	1	131	IPR009072	GO:0046982
	Vvi1g1275	152	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	9	72	IPR003958	-
	Vvi1g1275	152	SUPERFAMILY	Histone-fold	5	102	IPR009072	GO:0046982

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1275	Vvi-Chr1	18582983	18583441	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g1275	1	101	CCAAT-HAP3 Transcription Factor Family	AT2G47810	68.317	1.17e-47	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Vvi1g1275		CBFD_NFYB_HMF	4.1e-23	CL0012

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1275	K08065		-	vvi:100249348	303.523