Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1274 ATGATTGGATGTGATGCATCAATCTTGCTTGATGATTCCTCCTCCATTCAAAGTGAGAAAAATACACCTAATAATTTGAATTCAGTTAGAGGATATGAAGTCATAGACCACGTAAAGTCTCAAGTGGAGAGCAACTGTCCCGGCATTGTATCTTGTGCTGACATTCTTGCAGTGGCAGCCCGAGATGCATCCGTTGCTGTTGGAGGGTCAACATGGACAGTGAAGCTTGGAAGAAGAGACTCCGCCACTTCAGGCCTCAGCCAAGCTTCCAACAACCTTCATAATTTGAGAGATAGCCTTGGTAGGCTTATTTCCTTGTTTGGTAGCAAAGGTTTGAGTACAAGATACATGGTTGCCCTTTCAGGTTCCCACACAATAGGCCAAGCAAGATGTGTGACATTCCAGGATAGGATATACTACAATGGAACTAATATTGACGCCAGCTTTGCTAGTACCAGAAGATGCTGTTGTCCTTCTAATAATGGGGATGGTGATGACAATCTTGCAGCCCTAGATTTGGTTACACCCTGA 531 0.4407 MIGCDASILLDDSSSIQSEKNTPNNLNSVRGYEVIDHVKSQVESNCPGIVSCADILAVAARDASVAVGGSTWTVKLGRRDSATSGLSQASNNLHNLRDSLGRLISLFGSKGLSTRYMVALSGSHTIGQARCVTFQDRIYYNGTNIDASFASTRRCCCPSNNGDGDDNLAALDLVTP* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1274 176 SUPERFAMILY Heme-dependent peroxidases 3 176 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PANTHER PEROXIDASE 72-RELATED 3 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 Pfam Peroxidase 3 169 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 Gene3D - 3 93 - -
Vvi1g1274 176 ProSiteProfiles Plant heme peroxidase family profile. 1 176 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 Gene3D Peroxidase, domain 2 94 176 - -
Vvi1g1274 176 PRINTS Haem peroxidase superfamily signature 68 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Haem peroxidase superfamily signature 116 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Haem peroxidase superfamily signature 50 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Plant peroxidase signature 68 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Plant peroxidase signature 170 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Plant peroxidase signature 115 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Plant peroxidase signature 30 43 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi1g1274 176 PRINTS Plant peroxidase signature 49 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1274 Vvi-Chr1 18557872 18558676 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1274 3 176 Peroxidase AT1G14550 60.571 3.89e-68 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1274 K00430 - vvi:100259700 274.633