LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g1273	ATGAGTAACTTGGATTCATACGAGACCAAATTTCGAGCGCACTTGGTCCCAGTTGTAAGACCAAATCTAGCCCTGGATTTGGTGACACCCAATTCTTTTGATAACAATTACTTTAAGAATCTGATTCAGAAGAAGGGTCTTCTTCAATCAGATCAAGTACTTTTCAGCGGAGGTTGTGCTGACAGTATCGTCACTGGGTATAGCAAGAGCCCTTCAACATTCACTCTGATTTTGCATCAGCCATGGTTAAGATGGGAAACATTGAACCTCTCACTGGCTCTGCTGGAGAGATACGAAAACTCTGCAGTGCTATAA	315	0.4254	MSNLDSYETKFRAHLVPVVRPNLALDLVTPNSFDNNYFKNLIQKKGLLQSDQVLFSGGCADSIVTGYSKSPSTFTLILHQPWLRWETLNLSLALLERYENSAVL*	105

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g1273	104	Pfam	Peroxidase	24	69	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vvi1g1273	104	SUPERFAMILY	Heme-dependent peroxidases	23	75	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Vvi1g1273	104	ProSiteProfiles	Plant heme peroxidase family profile.	1	74	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Vvi1g1273	104	Gene3D	Peroxidase, domain 2	5	76	-	-
	Vvi1g1273	104	PRINTS	Plant peroxidase signature	40	57	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vvi1g1273	104	PRINTS	Plant peroxidase signature	24	39	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Vvi1g1273	104	PANTHER	PEROXIDASE 72-RELATED	22	76	IPR000823	GO:0004601\|GO:0006979\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g1273	Vvi-Chr1	18542141	18542675	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g1273	25	74	Peroxidase	AT1G14540	72.549	1.09e-19	79.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi1g1273	K00430		-	vvi:100263220	100.908