Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1272 ATGGCTGATGAGCAGGATCTCCTGCTGCCTATTGCCAATGTGGGTCGGATCATGAAGCAAATCCCGCCACCAAGTGCCAAGATTTCCAAAGAAGCCAAAGAAACAATGCAAGAATGTGTATCTGAGTTCATAAAGTTTGTTACTGGCGAAGCATCTGAAAAGTGTCAAAGGGAGAACCGAAAGACCGTGAATGGAGATGACATTTGTTGGGCACTGAGTGCTCTGGGATTTGATGACCATGCTGAGGCTATAGTAAGGTATTTGCATAAGTACAGGGAGTTTGAAAGAGAGAGACCAAATCAAAGGGTCCAAAATGAAGTCGATAGCACTCGAACCAAATCTGGAGCATCAGACTATAAATGCATCCAAGCGGGGAAGCAGACTGAAACTCCTACTCCAATATTATTGTTCGAAGTTACTGATCAAAATGGTAATAGATCTCTTACAAAGCCATTTTGA 459 0.4292 MADEQDLLLPIANVGRIMKQIPPPSAKISKEAKETMQECVSEFIKFVTGEASEKCQRENRKTVNGDDICWALSALGFDDHAEAIVRYLHKYREFERERPNQRVQNEVDSTRTKSGASDYKCIQAGKQTETPTPILLFEVTDQNGNRSLTKPF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1272 152 FunFam Nuclear transcription factor Y subunit B-6 1 115 - -
Vvi1g1272 152 SUPERFAMILY Histone-fold 5 102 IPR009072 GO:0046982
Vvi1g1272 152 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi1g1272 152 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Vvi1g1272 152 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi1g1272 152 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi1g1272 152 Gene3D Histone, subunit A 1 131 IPR009072 GO:0046982
Vvi1g1272 152 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1272 Vvi-Chr1 18533069 18533527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1272 1 102 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.569 1.60e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi1g1272 CBFD_NFYB_HMF 4.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1272 K08065 - vvi:100261324 310.071