Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1270 ATGGACCATCTGTCCAATACAAAAGGTTTTTCTCTTCGGACGATGAAATACTTGGTCTTAGATGAGGCTGATAGGTTGCTGAATGACGACTTTGAGAAAGCCATTGATGAGATTTTAAGTGTTATCCCACAAGAGCGAAAGACATACTTATTTTCTGCTACTATGACGAAAAAGGTGCGTAAGCTCCAGAGGGCCTGTCTCAGGAATCCTGTGAAGATTGAGGCTGGATCTAAATATTCCACTGTTGATACACTCAAGCAACAGTATCGCTTTGTTCCTGCTAAGTACAAGGAATGCTATCTTGTATATATTCTAACTGAGTTATCTGGAAGTACAACAATGGTTTTCACTCGTACTTGTGATGCAACTCGCCTATTGGCTTTGCTTCTTCGAAACCTTGGTTTAGGGGCTATCCCAATCAGTGGTCATATGAGTCAGACTAAAAGGCTTGGAGCACTGAACAAGTTTAAGGCTGGAGAATGTAATATACTTATCTGCACTGATGTGGCAAGTAGAGGACTTGATATTCCATCTGTTGATATGGTTATCAATTATGATATTCCCTCAAACTCCAAGGATTACATACATCGAGTGGGAAGAACTGCTCATGCAGGAAGATCTGGGGTCGCAATCTCACTAGTGAACCAGTACGAGTTGGAGTGGTACATACAGATAGAGAAGCTTATTGGTAGGCACCTTTCTACATTTGGTATGCATTCTGGTGGGTAA 729 0.4143 MDHLSNTKGFSLRTMKYLVLDEADRLLNDDFEKAIDEILSVIPQERKTYLFSATMTKKVRKLQRACLRNPVKIEAGSKYSTVDTLKQQYRFVPAKYKECYLVYILTELSGSTTMVFTRTCDATRLLALLLRNLGLGAIPISGHMSQTKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTAHAGRSGVAISLVNQYELEWYIQIEKLIGRHLSTFGMHSGG* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1270 242 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 100 242 IPR001650 -
Vvi1g1270 242 CDD SF2_C_DEAD 85 214 - -
Vvi1g1270 242 Gene3D - 1 81 IPR027417 -
Vvi1g1270 242 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 73 IPR014001 -
Vvi1g1270 242 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 231 - -
Vvi1g1270 242 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 19 27 IPR000629 -
Vvi1g1270 242 SMART helicmild6 124 205 IPR001650 -
Vvi1g1270 242 Gene3D - 82 239 IPR027417 -
Vvi1g1270 242 Pfam DEAD/DEAH box helicase 2 62 IPR011545 GO:0003676|GO:0005524
Vvi1g1270 242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 226 IPR027417 -
Vvi1g1270 242 Pfam Helicase conserved C-terminal domain 100 205 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1270 Vvi-Chr1 18500365 18515258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1270 4 228 Eukaryotic Initiation Factors Gene Family AT5G11170 30.932 6.68e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1270 K14777 - vvi:100246466 420.239